New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	681121 =	12 (0.070)	65 (0.370)	37/166	10.1	0.42	coding (2486/6438 nt)	RCAP_rcc00630	ice nucleation protein repeat family protein
	?	NC_014034	= 681528	166 (0.780)					coding (2079/6438 nt)	RCAP_rcc00630	ice nucleation protein repeat family protein
Rejected: Position hash score below cutoff.

GCTGACCTCGGCGCAGATGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT..................................................................................................  <  NC_014034/681237‑681121 ....................................................................................................GGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGCGTCTGGGCTCGGCGCAGATCGGCGCGCTGACCAGCACGCAGATCGCGGCGCTCGAGGCGGCGGATCTGGCGC  <  NC_014034/681528‑681431                                                                                                                                                                                                                                          TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                                                                                   <  2:621098/101‑1 (MQ=1)                  TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                                                                                   <  1:3998391/101‑1 (MQ=1)                  TGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTG                                                                                                   >  2:2006800/1‑101 (MQ=1)                    GCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGC                                                                                                 <  1:4196210/101‑1 (MQ=1)                     CCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCG                                                                                                >  2:1116459/1‑101 (MQ=1)                       GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                              >  1:116740/1‑101 (MQ=1)                       GCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCT                                                                                              <  2:3045110/101‑1 (MQ=1)                        CGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTG                                                                                             <  1:2965703/101‑1 (MQ=1)                         GCTGAGCACGACGCCGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGACCAAGGGGCTCGGCACCGATGACATCGTGGCGCTGc                                                                                            >  2:2476925/1‑100 (MQ=0)                         GCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGA                                                                                            >  1:188795/1‑101 (MQ=1)                          CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                           >  2:2268405/1‑101 (MQ=1)                          CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                           <  2:724654/101‑1 (MQ=1)                          CTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGAC                                                                                           <  2:386776/101‑1 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                          >  1:1727738/1‑101 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                          >  2:3768971/1‑101 (MQ=1)                           TGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACG                                                                                          >  2:3173425/1‑101 (MQ=1)                            GAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGA                                                                                         >  1:3109555/1‑101 (MQ=1)                             AGCACGGCGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGAC                                                                                        <  1:3482095/101‑1 (MQ=1)                             AGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGCTGACATCGTGGCGCTGACGAC                                                                                        <  1:3118963/101‑1 (MQ=1)                             AGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGAC                                                                                        >  1:2684716/1‑101 (MQ=1)                             AGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGAC                                                                                        <  2:4012875/101‑1 (MQ=1)                              GCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACG                                                                                       <  2:570188/101‑1 (MQ=1)                               CACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGG                                                                                      >  1:2791572/1‑101 (MQ=1)                               CACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGG                                                                                      >  2:1750863/1‑101 (MQ=1)                                ACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGC                                                                                     <  1:2199396/101‑1 (MQ=1)                                 CGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCG                                                                                    <  1:2463190/101‑1 (MQ=1)                                  GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGC                                                                                   >  2:1253766/1‑101 (MQ=1)                                  GACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGC                                                                                   >  1:520833/1‑101 (MQ=1)                                   ACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCA                                                                                  >  1:503909/1‑101 (MQ=1)                                     GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCTCCGATGACATCGTGGCGCTGACGACGGCGCAGG                                                                                >  1:3673976/1‑101 (MQ=1)                                     GCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGG                                                                                <  2:2562303/101‑1 (MQ=1)                                      CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                                                                               >  1:1396855/1‑101 (MQ=1)                                      CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                                                                               >  1:1421808/1‑101 (MQ=1)                                      CAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGC                                                                               >  2:1978355/1‑101 (MQ=1)                                       AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCG                                                                              >  1:411905/1‑101 (MQ=1)                                       AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCG                                                                              >  1:1294279/1‑101 (MQ=1)                                       AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCG                                                                              <  2:421467/101‑1 (MQ=1)                                       AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCG                                                                              <  1:1497315/101‑1 (MQ=1)                                       AGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCG                                                                              >  2:18185/1‑101 (MQ=1)                                        GCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGTTGACATCGTGGCGCTGACGACGGCGCAGGCGG                                                                             <  2:2051809/101‑1 (MQ=11)                                        GCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGATGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACCACGGCGCAGGCGG                                                                             >  2:2626167/1‑101 (MQ=17)                                         CTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGC                                                                            >  1:113161/1‑101 (MQ=31)                                         CTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGC                                                                            >  2:1031698/1‑101 (MQ=31)                                         CTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGC                                                                            <  1:3173664/101‑1 (MQ=31)                                         CTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCCCGGCCCCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGC                                                                            <  1:4191411/101‑1 (MQ=9)                                           TGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGg                                                                          >  1:3811988/1‑100 (MQ=17)                                             CGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcg                                                                        <  2:3798953/101‑4 (MQ=17)                                               GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCATTGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgct                                                                      <  1:2946703/101‑6 (MQ=2)                                               GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgct                                                                      >  2:3456605/1‑96 (MQ=11)                                               GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgct                                                                      <  2:3404309/101‑6 (MQ=11)                                               GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgct                                                                      <  2:2900363/101‑6 (MQ=11)                                               GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgct                                                                      >  2:2840755/1‑96 (MQ=11)                                               GCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgct                                                                      <  1:3136678/101‑6 (MQ=11)                                                 GCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgctgg                                                                    >  2:2796861/1‑94 (MQ=0)                                                 GCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGgcgctgg                                                                    <  2:1057096/101‑8 (MQ=0)                                                   TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGC                                                                  <  1:1978481/101‑1 (MQ=0)                                                   TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGC                                                                  >  1:3511066/1‑101 (MQ=0)                                                   TGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGC                                                                  >  1:3336322/1‑101 (MQ=0)                                                    GAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGGGCTGGGCc                                                                 >  2:368318/1‑100 (MQ=255)                                                    GAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCT                                                                 >  2:1568027/1‑101 (MQ=2)                                                     AATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTC                                                                >  1:4231742/1‑101 (MQ=9)                                                      ATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTCG                                                               >  1:2099732/1‑101 (MQ=255)                                                       TACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTCGc                                                              >  2:1650712/1‑100 (MQ=255)                                                        ACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTCGac                                                             >  1:2122043/1‑99 (MQ=255)                                                        ACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGGCGCTGGGCTCGac                                                             >  2:142684/1‑99 (MQ=255)                                                                                                                                                                                                                         GCTGACCTCGGCGCAGATGGCCGCGCTGAGCACGACGCAGCTTGCGGCGCTGAATACGGCCAGCGTGACGGCGCTGAGTGCCAATGCGATCAAGGGCCTCGGCACCGATGACATCGT..................................................................................................  <  NC_014034/681237‑681121 ....................................................................................................GGCACCGATGACATCGTGGCGCTGACGACGGCGCAGGCGGCGCGTCTGGGCTCGGCGCAGATCGGCGCGCTGACCAGCACGCAGATCGCGGCGCTCGAGGCGGCGGATCTGGCGC  <  NC_014034/681528‑681431 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG