New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	728003 =	164 (0.830)	2 (0.010)	2/186	31.7	0.01	coding (129/915 nt)	bchL	light‑independent protochlorophyllide reductase iron‑sulfur ATP‑binding protein
	?	NC_014034	2841243 =	199 (0.940)					coding (769/855 nt)	RCAP_rcc02650	UspA domain‑containing protein
Rejected: Position hash score below cutoff.

CGACCTGAAGGGCTTCGACGGTGACGGCGAGGGCTCGGTGCAGGTGCACGACAGCGAAGACATCGGCCTCGATGTCGGCGGCGCGCGCGTGTTCTCGGTCTATGGC...................................................................................................  <  NC_014034/728108‑728003 ...................................................................................................CTATGGCCATTCGCGGATCCGCAGCCTGATCATCGGCTCGACCACCACCGCCACGATGCGCGCCTGCAAGGTGCCGGTGGTGCTGATCCGCTGATCCCGCGCTAAC  >  NC_014034/2841243‑2841341                                                                                                                                                                                                                                                tctGGTGCAGGTGCACGACAGCGAAGACATCGGCCTCGATGTCGGCGGCGCGCGCGTGTTCTCGGTCTATGGCCATTCGCGGATCCGCAGCCTGATCATCG                                                                         <  1:252844/98‑1 (MQ=255)                                     GGTGCAGGTGCACGACAGCGAAGACATCGGCCTCGATGTCGGCGGCGCGCGCGTGTTCTCGGTCTATGGCCATTCGCGGATCCGCAGCCTGATCATCGaga                                                                      >  2:252799/1‑98 (MQ=255)                                                                                                                                                                                                               CGACCTGAAGGGCTTCGACGGTGACGGCGAGGGCTCGGTGCAGGTGCACGACAGCGAAGACATCGGCCTCGATGTCGGCGGCGCGCGCGTGTTCTCGGTCTATGGC...................................................................................................  <  NC_014034/728108‑728003 ...................................................................................................CTATGGCCATTCGCGGATCCGCAGCCTGATCATCGGCTCGACCACCACCGCCACGATGCGCGCCTGCAAGGTGCCGGTGGTGCTGATCCGCTGATCCCGCGCTAAC  >  NC_014034/2841243‑2841341 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG