New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	772485 =	122 (0.750)	16 (0.100)	5/154	25.4	0.11	intergenic (+68/+153)	RCAP_rcc00703/oppC1	deoxyribodipyrimidine photolyase‑related protein/oligopeptide ABC transporter permease OppC
	?	NC_014034	1473433 =	145 (0.680)					intergenic (+140/+79)	nadE/RCAP_rcc01367	NAD(+) synthase (glutamine‑hydrolyzing)/hypothetical protein
Rejected: Position hash score below cutoff.

CTTTCCCCGCCCGCAGCGCAACGCCTCGACACGACCGCCAATCCCAGGTGCAACAGAGGCCAGCGCCCGGCCCGGGCGGCTCGAAAGCGCCCGCCATGGGGCGGGGCGGGCGCTGGCCGAG....................................................................................................  <  NC_014034/772605‑772485 ....................................................................................................GCGGGGCGGGCGCTGGCCGAGGGCCTTTGGGCCCCCGGCGGTCACGGGGCAAATGTCGCGCATGACCTCGGCGATGGCCTCGGTCAAAAAGGGCAGGGGCCTAGACCCCCAACCGCCGCCT  >  NC_014034/1473433‑1473532                                                                                                                                                                                                                                                    CGCCTCGACACGACCGCCAATCCCAGGTGCAACAGAGGCCAGCGCCCGGCCCGGGCGGCTCGAAAGCGCCCGCCATGGGGCGGGGCGGGGGCTGGCCCAGG                                                                                                     >  2:3617567/1‑101 (MQ=0)                      CGCCTCGACACGACCGCCAATCCCAGGTGCAACAGAGGCCAGCGCCCGGCCCGGGCGGCTCGAAAGCGCCCGCCATGGGGCGGGGCGGGCGCTGGGCGAGG                                                                                                     >  1:1548745/1‑101 (MQ=1)                         CTCGACACGACCGCCAATCCCAGGTGCAACAGAGGCCAGCGCCCGGCCCGGGCGGCTCGAAAGCGCCCGCCATGGGGCGGGGCGGGGGCCGGCCGAGGGCC                                                                                                  >  2:2183605/1‑101 (MQ=0)                         CTCGACACGACCGCCAATCCCAGGTGCAACAGAGGCCAGCGCCCGGCCCGGGCGGCTCGAAAGCGCCCGCCATGGGGCGGGGCGGGCGCCGGGCGAGGGCC                                                                                                  >  1:123203/1‑101 (MQ=0)                          TCGACACGACCGCCAATCCCAGGTGCAACAGAGGCCAGCGCCCGGCCCGGGCGGCTCGAAAGCGCCCGCCATGGGGCGGGGCGGGCGCTGGCCGAGGGGCT                                                                                                 >  1:1027301/1‑101 (MQ=1)                           CGACACGACCGCCAATCCCAGGTGCAACAGAGGCCAGCGCCCGGCCCGGGCGGCTCGAAAGCGCCCGCCATGGGGCGGGGCGGGGGCTGGGCCAGGGCCTg                                                                                                >  1:3443858/1‑100 (MQ=0)                             ACACGACCGCCAATCCCAGGTGCAACAGAGGCCAGCGCCCGGCCCGGGCGGCTCGAAAGCGCCCGCCATGGGGCGGGGCGGGCGCTGGCCGAGGGCCTgaa                                                                                              >  2:4221631/1‑98 (MQ=1)                                                                                            ccgcggGGGGCGGGGGGGGCGCTGGCCGAGGGCCTTTGGGCCCCCGGCGGTCACGGGGCAAATGTCGCGCATGACCTCGGCGATGGCCTCGGTCAAAAAGG                               <  2:3734914/95‑1 (MQ=12)                                                                                              ggggGGGGGGGGGCGGGCGCTGGCCGAGGGCCTTTGGGCCCCCGGCGGTCACGGGGCAAATGTCGCGCATGACCTCGGCGATGGCCTCGGTCAAAAAGGGC                             <  1:1433256/97‑1 (MQ=2)                                                                                               cggGGGGGGGGGCGGGCGCTGGCCGAGGGCCTTTGGGCCCCCGGCGGTCACGGGGCAAATGTCGCGCATGACCTCGGCGATGGCCTCGGTCAAAAAGGGCA                            <  1:3853978/98‑1 (MQ=11)                                                                                               cggGGGGCGGGGCGGGCGCTGGCCGAGGGCCTTTGGGCCCCCGGCGGTCACGGGGCAAATGTCGCGCATGACCTCGGCGATGGCCTCGGTCAAAAAGGGCA                            <  1:159173/98‑1 (MQ=11)                                                                                                  GGGGGGGGGGGGGCGCTGGCCGAGGGCCTTTGGGCCCCCGGCGGTCACGGGGCAAATGTCGCGCATGACCTCGGCGATGGCCTCGGTCAAAAAGGGCAGGG                         <  1:3702154/101‑1 (MQ=0)                                                                                                  GGGGCGGGCCGGGCGCTGGCCGAGGGCCTTTGGGCCCCCGGCGGTCACGGGGCAAATGTCGCGCATGACCTCGGCGATGGCCTCGGTCAAAAAGGGCAGGG                         <  2:527185/101‑1 (MQ=1)                                                                                                   GGGGGGGGCGGGCGCTGGCCGAGGGCCTTTGGGCCCCCGGCGGTCACGGGGCAAATGTCGCGCATGACCTCGGCGATGGCCTCGGTCAAAAAGGGCAGGGG                        <  2:1385584/101‑1 (MQ=1)                                                                                                   GGGCGGGGCGGGCGCTGGCCGAGGGCCTTTGGGCCCCCGGCGGTCACGGGGCAAATGTCGCGCATGACCTCGGCGATGGCCTCGGTCAAAAACGGCAGGGG                        >  2:524555/1‑101 (MQ=1)                                                                                                    GGCGGGGCGGGCGCTGGCCGAGGGCCTTTGGGCCCCCGGCGGTCACGGGGCAAATGTCGCGCATGACCTCGGCGATGGCCTCGGTCAAAAAGGGCAGGGGC                       >  2:3101676/1‑101 (MQ=1)                                                                                                                                                                                                                               CTTTCCCCGCCCGCAGCGCAACGCCTCGACACGACCGCCAATCCCAGGTGCAACAGAGGCCAGCGCCCGGCCCGGGCGGCTCGAAAGCGCCCGCCATGGGGCGGGGCGGGCGCTGGCCGAG....................................................................................................  <  NC_014034/772605‑772485 ....................................................................................................GCGGGGCGGGCGCTGGCCGAGGGCCTTTGGGCCCCCGGCGGTCACGGGGCAAATGTCGCGCATGACCTCGGCGATGGCCTCGGTCAAAAAGGGCAGGGGCCTAGACCCCCAACCGCCGCCT  >  NC_014034/1473433‑1473532 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG