New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	788008 =	76 (0.380)	46 (0.230)	24/188	16.9	0.55	intergenic (+80/+56)	pntB/RCAP_rcc00717	pyridine nucleotide transhydrogenase subunit beta/hypothetical protein
	?	NC_014034	= 3701428	NA (NA)					intergenic (+5/+44)	grpE/mutS	GrpE protein/DNA mismatch repair protein MutS
Rejected: Position hash score below cutoff.

GGGCGCTGCTGCTGATCTCGCTCAAGCTGCTCTGGGACCTTCTTCCCTGAGCCCCCCTGTCACCTTGCGGCAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGC....................................................................................................  <  NC_014034/788113‑788008 ....................................................................................................CCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATGATGTCAC  <  NC_014034/3701428‑3701329                                                                                                                                                                                                                                                                           ttatCTTGCTGAAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGA                                                >  1:994567/5‑101 (MQ=255)                                                            ttatCTTGCTGAAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGA                                                >  2:336412/5‑101 (MQ=255)                                                             tatCTTGCTGAAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGAC                                               >  1:1172708/4‑101 (MQ=255)                                                              atCTTGCTGAAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACG                                              >  1:2732673/3‑101 (MQ=255)                                                                CTTGCTGAAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGT                                            >  1:4143027/1‑101 (MQ=255)                                                                 TTGCTGAAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCATACGGgc                                           >  2:3714847/1‑99 (MQ=255)                                                                   gctgaAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGCCTTTCGCCGGACGCAGCAGCCGGTCGT                                         >  1:1983842/6‑101 (MQ=255)                                                                    ctgaAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGTAGCACACGGTCGTG                                        >  2:905871/5‑101 (MQ=255)                                                                    ctgaAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTG                                        >  1:781147/5‑101 (MQ=25)                                                                     tgaAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGC                                       >  2:2184899/4‑101 (MQ=25)                                                                       aAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCCGACAGCCGTGCAG                                     >  2:1176332/2‑101 (MQ=255)                                                                        AAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGC                                    >  1:1911397/1‑101 (MQ=35)                                                                        AAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGC                                    >  2:2929956/1‑101 (MQ=35)                                                                        AAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGC                                    >  1:2867942/1‑101 (MQ=35)                                                                         AATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCA                                   >  1:3226108/1‑101 (MQ=35)                                                                         AATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCA                                   >  1:3143322/1‑101 (MQ=35)                                                                           TATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGG                                 >  1:434579/1‑101 (MQ=34)                                                                            ATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGA                                >  1:3448503/1‑101 (MQ=33)                                                                            ATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGA                                >  2:3556274/1‑101 (MQ=33)                                                                            ATCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGA                                >  1:2717069/1‑101 (MQ=33)                                                                             TCCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAA                               >  1:1548015/1‑101 (MQ=32)                                                                              CCTGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAG                              >  2:3050833/1‑101 (MQ=31)                                                                                TGGGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGCCGGTCGTGCAGCAGGAAGCC                            >  1:91862/1‑101 (MQ=1)                                                                                  GGGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGT                          >  1:2141691/1‑101 (MQ=1)                                                                                   GGGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTC                         >  2:2405829/1‑101 (MQ=1)                                                                                    GGTCCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCG                        >  1:3542474/1‑101 (MQ=1)                                                                                       CCGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCC                     >  2:968903/1‑101 (MQ=1)                                                                                        CGGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCA                    >  2:2464848/1‑101 (MQ=1)                                                                                         GGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCAT                   >  2:418347/1‑101 (MQ=1)                                                                                         GGGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCAT                   >  2:2501952/1‑101 (MQ=1)                                                                                          GGGGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATC                  >  2:959142/1‑101 (MQ=1)                                                                                            GGCGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCAC                >  1:3066262/1‑101 (MQ=1)                                                                                              CGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCT              >  2:232205/1‑101 (MQ=1)                                                                                              CGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCT              >  2:2327365/1‑101 (MQ=1)                                                                                              CGAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCT              >  2:2358971/1‑101 (MQ=1)                                                                                               GAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTG             >  2:2773174/1‑101 (MQ=1)                                                                                               GAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTG             >  2:1841542/1‑101 (MQ=1)                                                                                               GAAGCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTG             >  1:312518/1‑101 (MQ=1)                                                                                                cccCCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGA            <  1:3581228/98‑1 (MQ=0)                                                                                                cccCCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGA            <  2:2237235/98‑1 (MQ=0)                                                                                                cccCCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGA            <  2:2300746/98‑1 (MQ=0)                                                                                                  cCCCCCGCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAAT          <  1:2819396/100‑1 (MQ=1)                                                                                                  GCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAAT          >  2:499485/1‑101 (MQ=1)                                                                                                  GCCCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGCAAGACGTCGTCCATCACTTGAAT          >  2:1282283/1‑101 (MQ=0)                                                                                                   CCCCCCCCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATG         <  2:2964161/101‑1 (MQ=0)                                                                                                    CCCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATGA        >  1:2155682/1‑101 (MQ=1)                                                                                                                                                                                                                GGGCGCTGCTGCTGATCTCGCTCAAGCTGCTCTGGGACCTTCTTCCCTGAGCCCCCCTGTCACCTTGCGGCAAATATCCTGGGGGTCCGGGGGCGAAGCCCCCGGC....................................................................................................  <  NC_014034/788113‑788008 ....................................................................................................CCCGGCCTGCCTCAGGCTTTCGGCATCGAACTCACGCCGACTTTCGCCGGACGCAGCAGACGGTCGTGCAGCAGGAAGCCGTCGTCCATCACCTGAATGATGTCAC  <  NC_014034/3701428‑3701329 Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 30 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG