New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	925895 =	199 (0.960)	47 (0.230)	25/196	17.2	0.27	intergenic (+148/+26)	RCAP_rcc00838/glcB	DnaJ domain‑containing protein/malate synthase
	?	NC_014034	1255906 =	52 (0.250)					intergenic (+76/+166)	RCAP_rcc01184/RCAP_rcc01185	CsbD family protein/methyl‑accepting chemotaxis sensory transducer
Rejected: Position hash score below cutoff.

GGATCCAGTCCTCGGGCTATACCGAGCCGGTGCTGCACCAGCGCCGGGCGCAGGTGAAGGCCGCCAAAGCATAAGAAAGGGGGGGCGCTGCCCCCCGTCC....................................................................................................  <  NC_014034/925994‑925895 ...................................................................................................CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTCCCGA  >  NC_014034/1255906‑1256005                                                                                                                                                                                                                                                                                 ccgaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAA                             <  2:3542341/95‑1 (MQ=255)                                                                        ccgaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAA                             <  1:2210259/95‑1 (MQ=255)                                                                         cgaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGNTTTCACCTTGGGCCAAA                            >  2:674688/6‑101 (MQ=255)                                                                         cgaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAA                            <  1:2372339/96‑1 (MQ=255)                                                                          gaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAAT                           >  2:1733232/5‑101 (MQ=255)                                                                          gaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAAT                           >  2:3860238/5‑101 (MQ=255)                                                                          gaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAAT                           >  1:1937424/5‑101 (MQ=255)                                                                          gaagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAAT                           <  1:1244090/97‑1 (MQ=255)                                                                           aagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCCCCTTGGGCCAAATA                          >  1:802885/4‑101 (MQ=255)                                                                           aagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATA                          <  2:509458/98‑1 (MQ=255)                                                                           aagAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATA                          >  2:2260526/4‑101 (MQ=255)                                                                            ctAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATAT                         <  1:3828987/99‑1 (MQ=255)                                                                            agAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATAT                         <  2:791856/99‑1 (MQ=255)                                                                            agAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATAT                         <  2:1573134/99‑1 (MQ=255)                                                                             ggGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATC                        <  1:995121/99‑1 (MQ=255)                                                                             gAGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATC                        <  2:2587037/100‑1 (MQ=255)                                                                              AGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATaa                       >  2:3828730/1‑99 (MQ=255)                                                                              AGGGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCC                       <  2:1014468/101‑1 (MQ=255)                                                                                GGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCG                     <  2:882459/101‑1 (MQ=255)                                                                                GGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCG                     <  2:302738/101‑1 (MQ=255)                                                                                GGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCG                     <  2:2869701/101‑1 (MQ=255)                                                                                GGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCG                     <  1:3875948/101‑1 (MQ=255)                                                                                GGGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCG                     <  1:2891537/101‑1 (MQ=255)                                                                                 GGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGG                    >  2:1717502/1‑101 (MQ=255)                                                                                 GGGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGG                    <  1:3050226/101‑1 (MQ=255)                                                                                  GGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGG                   >  1:2728365/1‑101 (MQ=255)                                                                                  GGGGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGG                   >  2:2239536/1‑101 (MQ=255)                                                                                    GGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGG                 >  2:1141310/1‑101 (MQ=255)                                                                                    GGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGG                 <  1:1783337/101‑1 (MQ=255)                                                                                    GGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGG                 <  2:2501013/101‑1 (MQ=255)                                                                                    GGCGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGG                 <  1:3742053/101‑1 (MQ=255)                                                                                      CGCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGG               <  2:3122169/101‑1 (MQ=255)                                                                                       GCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGG              <  1:1692523/101‑1 (MQ=255)                                                                                       GCTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGG              >  2:3829516/1‑101 (MQ=255)                                                                                        CTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCGAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGG             <  1:3787365/101‑1 (MQ=255)                                                                                        CTGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGGTTTCACCTTGGGCCAAAAATCCCGGGGGGGGG             >  1:788784/1‑101 (MQ=255)                                                                                         cGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGG            <  2:1553139/100‑1 (MQ=255)                                                                                         TGCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGG            >  2:4138854/1‑101 (MQ=255)                                                                                          GCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCCCCTTGGGCCAAATATCCCGGGGGGGGGGA           <  2:612961/101‑1 (MQ=255)                                                                                          GCCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGA           >  1:3362954/1‑101 (MQ=255)                                                                                           CCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAA          >  2:3311095/1‑101 (MQ=255)                                                                                           CCCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAA          <  1:4084269/101‑1 (MQ=255)                                                                                            CCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAAC         >  1:330613/1‑101 (MQ=255)                                                                                            CCCCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAAC         >  1:2583331/1‑101 (MQ=255)                                                                                              CCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGGACTT       >  2:3420813/1‑101 (MQ=255)                                                                                              CCCGT.CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTT       >  1:3244896/1‑101 (MQ=255)                                                                                                                                                                                                          GGATCCAGTCCTCGGGCTATACCGAGCCGGTGCTGCACCAGCGCCGGGCGCAGGTGAAGGCCGCCAAAGCATAAGAAAGGGGGGGCGCTGCCCCCCGTCC....................................................................................................  <  NC_014034/925994‑925895 ...................................................................................................CCCTGCGGGACTCCCCCCGGGATATTTCCGCCAAGGGGAAATGAACCCGGGGCGCGGCTTTCACCTTGGGCCAAATATCCCGGGGGGGGGGAACTTCCCGA  >  NC_014034/1255906‑1256005 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG