New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 974307	1 (0.010)	10 (0.050)	8/188	26.1	0.17	intergenic (+187/+72)	RCAP_rcc00884/RCAP_rcc00885	hypothetical protein/hypothetical protein
	?	NC_014034	= 1103377	96 (0.450)					intergenic (‑377/+41)	ugpB/regA2	sn‑glycerol‑3‑phosphate‑binding periplasmic protein ugpB/photosynthetic apparatus regulatory protein RegA
Rejected: Position hash score below cutoff.

CCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG....................................................................................................  >  NC_014034/974205‑974307 ..................................................................................................CCGGGGGTCCGGGGGCGGAGCCCCCGGCGGATCGCCGCGCGGCCGCGCGGCGAAATCGCCCCGAGGCGCCCCCCGCGTTCGGACCTCTCCGTCGCGGCGCCGGTCC  <  NC_014034/1103377‑1103278                                                                                                                                                                                                                    CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTC                                                                                                   <  1:3051432/101‑1 (MQ=0)          CCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGG                                                                                                >  2:189695/1‑101 (MQ=0)              GCGTATTTGCACCAAGAAAAATCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGC                                                                                            <  2:2330993/101‑1 (MQ=0)               CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCG                                                                                           <  1:514512/101‑1 (MQ=0)               CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCG                                                                                           <  1:900956/101‑1 (MQ=0)                    TTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCC                                                                                      <  1:3080435/101‑1 (MQ=0)                       CACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC                                                                                   <  1:48023/101‑1 (MQ=0)                         CCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGGGGAGCCCCCGG                                                                                 >  2:2422181/1‑101 (MQ=0)                          CAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCCGC                                                                                >  1:1472569/1‑101 (MQ=0)                                 AAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCCGGCGGggggg                                                                         >  1:1717089/1‑96 (MQ=0)                                                                                                                                                                                                              CCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG....................................................................................................  >  NC_014034/974205‑974307 ..................................................................................................CCGGGGGTCCGGGGGCGGAGCCCCCGGCGGATCGCCGCGCGGCCGCGCGGCGAAATCGCCCCGAGGCGCCCCCCGCGTTCGGACCTCTCCGTCGCGGCGCCGGTCC  <  NC_014034/1103377‑1103278 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG