New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 9743071 (0.010)7 (0.040) 3/172 29.2 0.31 intergenic (+187/+72) RCAP_rcc00884/RCAP_rcc00885 hypothetical protein/hypothetical protein
?NC_014034 2880557 = 30 (0.140)coding (1028/1053 nt) pdxA 4‑hydroxythreonine‑4‑phosphate dehydrogenase
Rejected: Position hash score below cutoff.

TCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG...................  >  NC_014034/974199‑974307
................................................................................................CAAATATCCCGGGGGTCCGGGGGCAGAGCCCCC  >  NC_014034/2880557‑2880575
                                                                                                                                 
            CCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTC                  <  1:3051432/101‑1 (MQ=0)
               CCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGG               >  2:189695/1‑101 (MQ=0)
                   GCGTATTTGCACCAAGAAAAATCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGC           <  2:2330993/101‑1 (MQ=0)
                    CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCg          <  1:514512/101‑2 (MQ=0)
                    CGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCg          <  1:900956/101‑2 (MQ=0)
                         TTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCC     <  1:3080435/101‑1 (MQ=0)
                            CACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCGCTGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGGGTCCGGGGGCGGAGCCCCC  <  1:48023/101‑1 (MQ=0)
                                                                                                                                 
TCGCCCCCCGGACCCCCCAGCGTATTTGCACCAAGAAAAAGCAGACGGGCGGGATCCGGCATGGCCG.TGCGCAGCGGCTTGTTTTCACCTTGCGACAAATATCCCGGGG...................  >  NC_014034/974199‑974307
................................................................................................CAAATATCCCGGGGGTCCGGGGGCAGAGCCCCC  >  NC_014034/2880557‑2880575

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 24 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG