New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 975172 =202 (0.990)2 (0.010) 2/192 32.2 0.01 coding (206/999 nt) RCAP_rcc00885 hypothetical protein
?NC_014034 1495031 = 193 (0.910)intergenic (‑24/+96) RCAP_rcc01386/RCAP_rcc01387 hypothetical protein/RpiR family transcriptional regulator
Rejected: Position hash score below cutoff.

TGGGATCCGAGCAGCGGCGCGCGTGGGCAATTGCTGCTGGAGCGGCGCACCGAACTGGTCTCGACGCTTTTCGCGCTGGTGATGGCGGCCGAGGCGGCGGCGCT...................................................................................................  <  NC_014034/975275‑975172
....................................................................................................CGCTCATTGCAGGATCGCAGCCCGCCAGCAGGTCAGTCGAGTCGTGCATGAAGCGTCCACCCCGCGCGGGGGCACAGACCCGAAGTGAGCTTGCGTCCCGTCA  >  NC_014034/1495031‑1495129
                                                                                                                                                                                                           
                                                ACCGAACTGGTCTCGACGCTTTTCGCGCTGGTGATGGCGGCCGAGGCGGCGGCGCTCATTGCAGGATCGCAGCCCGCCAGCAGGTCAGTCGAGTCGTGCAT                                                        >  2:932883/1‑101 (MQ=255)
                                                                    TTTCGCGCTGGTGATGGCGGCCGAGGCGGCGGCGCTCATTGCAGGATCGCAGCCCGCCAGCAGGTCAGTCGAGTCGTGCATGAAGCGTCCACCCCGCGCGG                                    <  1:932968/101‑1 (MQ=255)
                                                                                                                                                                                                           
TGGGATCCGAGCAGCGGCGCGCGTGGGCAATTGCTGCTGGAGCGGCGCACCGAACTGGTCTCGACGCTTTTCGCGCTGGTGATGGCGGCCGAGGCGGCGGCGCT...................................................................................................  <  NC_014034/975275‑975172
....................................................................................................CGCTCATTGCAGGATCGCAGCCCGCCAGCAGGTCAGTCGAGTCGTGCATGAAGCGTCCACCCCGCGCGGGGGCACAGACCCGAAGTGAGCTTGCGTCCCGTCA  >  NC_014034/1495031‑1495129

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG