New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014035 = 18976120 (0.900)2 (0.010) 2/190 25.6 0.01 coding (25/891 nt) RCAP_rcp00026 LysR family transcriptional regulator
?NC_014035 = 19060 149 (1.060)intergenic (‑60/‑39) RCAP_rcp00026/RCAP_rcp00027 LysR family transcriptional regulator/hypothetical protein
Rejected: Position hash score below cutoff.

TGCCTCCAGCCGCGCGATGGTCTGCGACAGCGCCGTGGTGGACAGCCCCAGATCCAGCGCCGCCGCGCGGAACGACCCACGCCGCGCGATCGCCTGCACCGCCTC....................................................................................................  >  NC_014035/18872‑18976
....................................................................................................GCCTCGACGCGCCGCCCGATAATCGGGATAATCCAGCATCTGCTGATGACAGAATCGGGACAATCATGGAGGCCGGGCTCAAGGCGCTGGAGGCGGTGCAGGCGA  <  NC_014035/19060‑18961
                                                                                                                                                                                                             
                                   TGGTGGACAGCCCCAGATCCAGCGCCGCCGCGCGGAACGACCCACGCCGCGCGATCGCCTGCACCGCCTCGACGCGCCGCCCGATAATCGGGATAATCCAG                                                                       >  2:3726639/1‑101 (MQ=255)
                                             CCCCAGATCCAGCGCCGCCGCGCGGAACGACCCACGCCGCGCGATCGCCTGCACCGCCTCGACGCGCCGCCCGATAATCGGGATAATCCAGCATCTGCTGA                                                             <  1:3726893/101‑1 (MQ=255)
                                                                                                                                                                                                             
TGCCTCCAGCCGCGCGATGGTCTGCGACAGCGCCGTGGTGGACAGCCCCAGATCCAGCGCCGCCGCGCGGAACGACCCACGCCGCGCGATCGCCTGCACCGCCTC....................................................................................................  >  NC_014035/18872‑18976
....................................................................................................GCCTCGACGCGCCGCCCGATAATCGGGATAATCCAGCATCTGCTGATGACAGAATCGGGACAATCATGGAGGCCGGGCTCAAGGCGCTGGAGGCGGTGCAGGCGA  <  NC_014035/19060‑18961

Base quality scores:  ATCG  < 3 ≤  ATCG  < 29 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG