New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1193631	22 (0.110)	19 (0.090)	10/192	25.0	0.45	intergenic (+96/‑155)	metK/trmB	methionine adenosyltransferase/tRNA (guanine‑N(7)‑)‑methyltransferase
	?	NC_014034	= 1732863	25 (0.120)					intergenic (‑287/‑116)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

GAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGCAT  >  NC_014034/1193534‑1193731                                                                                                     |                                                                                                     gacgcGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCGCGGGCAAGCCCGAGGCGACCCGC...gggggg                                                                                                   <  1:1363793/97‑4 (MQ=255)  aGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTGGGGCAAGCCCGAGGCGACCCGC...ggggggc                                                                                                  <  1:3256380/101‑5 (MQ=255)  aGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggc                                                                                                  <  1:4139923/101‑5 (MQ=255)     cGGTTTCAAAAGATCCGGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...ggggggctcc                                                                                               <  1:193569/101‑8 (MQ=37)      ggTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGCGGCGACCCGC...gggggggggcc                                                                                              >  1:2044746/1‑93 (MQ=255)       gTTTCAAAAGATCCCGGGGAAGGGGGCTTCGGCCCCTTTTTTCATGCGTTGCAGGATATTTCGCCCCGGGCAAGCCCGAGGCGACCCGC...ggggggctccgc                                                                                             <  1:1319987/101‑10 (MQ=25)            aaaaGATCGGGGGGAGGGGGGCTTCGCCCCCTTTTTTGATGCGTTGCAGGATTTTTCCCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGcccccc                                                                                           <  1:2945724/101‑1 (MQ=12)            aaaaGATCGGGGGGAAGGGGGCTTCGGCCCCTTTTTTCATGCGTTGCAGGATATTTCGCCGCGGGCAAGCCCGGGGCGACCCGCGGGGGGCTCCGcccccc                                                                                           <  1:3522112/101‑1 (MQ=21)            aaaaGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGcccccc                                                                                           <  2:3199317/101‑1 (MQ=25)            aaaaGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGcccccc                                                                                           <  2:1277393/101‑1 (MQ=25)            aaaaGACCACGGGGAAGGGGGCTTCGCCCCCTTTTTTCAGGCGTTGCAGGATTTTTCGCCGCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGcccccc                                                                                           <  1:1608545/101‑1 (MQ=18)             aaaGATCGCGGGGAGGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATTTTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                                          <  2:2594745/101‑1 (MQ=21)             aaaGATCGCGGGGAAGGGGGCTTCGCCCCCTTTTTTCATGGGTTGCAGGATTTTTCCCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                                          <  1:1429306/101‑1 (MQ=18)             aaaGATCCCGGGGAAGGGGTCTTCGCCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                                          <  2:1762585/101‑1 (MQ=21)             aaaGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCg                                                                                          <  1:3238841/101‑1 (MQ=25)              aagaccggggggAGGGGGGCTTCGCCCCCTTTTTTCATGGGTTGCAGGATTTTCCCCCCGGGGCAAGCCCGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGc                                                                                         <  1:2871506/93‑1 (MQ=9)              aaGATCGCGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGc                                                                                         <  1:1195336/101‑1 (MQ=21)              aaGATCCCGGGGAAGGGGGCTTCGCCCCCTTTTTTCGGGCGTTGCGGGATTTTTCGCCTCGGGCAAGCCCGGGGGGACCCGCGGGGGGCTCCGCCCCCCGc                                                                                         <  1:1576427/101‑1 (MQ=12)              aaGATCAGGGGGAGGGGGGCTCCGCCCCCTTTTTTCATGCGTTGCAGGATATTCCGCCCCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGc                                                                                         <  1:3543083/101‑1 (MQ=18)                  tccgggggAAGGGGCCTTCGGCCCCCTTTTGCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGGGGCGCCCCGCGGGGGGCTCCGCCCCCCGCAccc                                                                                     <  1:1992293/97‑1 (MQ=18)                  tCACGGGGAAGGGGCTTTCGGCCCCCTTTTTCATGCGTCGCAGGATATTTCGCCTCGGGCAGGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAccc                                                                                     <  1:548055/101‑1 (MQ=17)                   cgcGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAATCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCAcccc                                                                                    <  2:3070762/99‑1 (MQ=21)                    ggggggAAGGGGGCTGCGTCCCCTGTTTGCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCAccccc                                                                                   <  2:2044608/99‑1 (MQ=17)                       gggAGGGGGGCTTCGGCCCCCTTTTTCAGGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCgg                                                                                <  1:210040/101‑1 (MQ=18)                                       cccccTTTTTAGTGCGATGCAGAATATTCCCCCTGGGACAACCCCGAGGGGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGa                                                                <  1:697490/101‑1 (MQ=2)                                           cTTTTTCATGCGTTGCAGGATTTTTCCCCTCGGGCAAGCCCGGGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAg                                                            <  1:3993055/101‑1 (MQ=14)                                                   tGCGTGGCAGGATTTTCCGCCTCGGGCAAGCCCGAGGCGACCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGAc                                                    <  2:394471/101‑1 (MQ=11)                                                               ttttcccccccGGCCAACCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGTAAGGGTcg                                        <  2:127581/91‑1 (MQ=11)                                                                        ccGGGCACCCCCGAGGCGCCCCGCGGGGGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCagag                               <  1:3805834/100‑1 (MQ=14)                                                                                                   gggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGc    >  1:2157592/1‑101 (MQ=255)                                                                                                    ggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGCa   >  1:2241950/1‑101 (MQ=255)                                                                                                    ggCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGCa   >  2:2890282/1‑101 (MQ=255)                                                                                                     gCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCCAAAGCAt  >  1:794084/1‑101 (MQ=255)                                                                                                     gCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGCAt  >  1:56883/1‑101 (MQ=255)                                                                                                     gCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGGCGCCTTGGCAAAAGCAt  >  1:3740966/1‑101 (MQ=255)                                                                                                     |                                                                                                     GAGCCGGTTTCAAAAGATCACGGGGAAGGGGGCTTCGGCCCCCTTTTTCATGCGTTGCAGGATATTTCGCCTCGGGCAAGCCCGAGGCGACCCGC...GGGCTCCGCCCCCCGCACCCCCCGGCGTATTTTGCCAAGGAAAAGCGCAAGACCGGGAAGGGTCGCGGTCAGAGCCCCCGGCGGGTCGCCTTGGCAAAAGCAT  >  NC_014034/1193534‑1193731 Base quality scores:  ATCG  < 3 ≤  ATCG  < 7 ≤  ATCG  < 17 ≤  ATCG  < 27 ≤  ATCG  < 38 ≤  ATCG