New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744809	39 (0.200)	28 (0.150)	13/180	21.9	0.42	intergenic (+194/+18)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	1732880 =	37 (0.170)					intergenic (‑304/‑99)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

TCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATCCGC  >  NC_014034/744716‑744908                                                                                               |                                                                                                     tCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCC.CGCGGGGCGCCCCGGGGCCG.CCCg                                                                                              >  1:3896678/1‑101 (MQ=18)           gccccccccccccCCCCCTTTTTTCCCTTGCCAAAAAAC.CCGGGGGGGGCGGGGGGGGGCCCCCCCGGGCGGGTCGCCTCGGGCTTGCCCCGAGGCGAAAt                                                                                     <  1:3481234/91‑1 (MQ=2)             cacccTGTGCTACCCCTGCTTTTCCTTGGAAAAGTACGCCGGGGGGTGCGGGCGCCGGAGGCACC.CGCGGCACGTCGCGGGCCCG.CCCCGGGCGGAAgctc                                                                                  >  2:3494114/4‑101 (MQ=9)                     cccACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCg                                                                          >  2:1947964/1‑101 (MQ=255)                                  ttCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCCCGAGCCAGTCCAgca                                                             >  2:1111494/1‑99 (MQ=255)                                            aaaTACGCCGGGGGGTGCGGGGGGCGGAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCCTCCCTGa                                                   >  2:1539792/1‑101 (MQ=255)                                                aCGCCGGGGGGTGCGGGGGGCGGAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCCGAATCATCCCTGAAAGc                                               >  2:1898161/1‑101 (MQ=255)                                                     ggggggTGCGGGGGGCGGAGCCCCC.CGCGGGTCGCCTCGGGCCCG.CCCCCGGCGAAATCTCACCCCTCGCGCCAGTCCCAAATCATCCCTGAAAGCCCATc                                          >  1:3964185/1‑101 (MQ=25)                                                            gCGGGGGGCGGAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCCCGAGCCAGGCCAGAATCATCCCTGAAAGCCCCTCCCCGGCa                                   >  1:3076661/1‑101 (MQ=25)                                                             cGGGGGGCGGAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCaa                                  >  1:736063/1‑101 (MQ=255)                                                              ggggggCGGAGCCCCC.CGCGGGTCGCCTCGGGGCTG.CCCGACGCGAAATCTCAACCCCCGAGCCAGTCCAGAATCCTCCCTCAAAACCCCCCCCCCGCAAc                                 >  2:1212870/1‑101 (MQ=21)                                                              ggggggCGGAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGGGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAc                                 >  1:1838996/1‑101 (MQ=255)                                                              ggggggCGGAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAAc                                 >  1:1224679/1‑101 (MQ=255)                                                               gggggCGGAGCCCCC.CGCGGGTCGCCTCGGGCCCG.CCCGAGGCGAAATCTCACCCCCCGAGCCAGTGCAGAATCATCCCTGAAAGCCCACCCGCGGCAAcc                                >  1:3630625/1‑101 (MQ=37)                                                                ggggCGGAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCCGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCCAccc                               >  2:3638504/1‑100 (MQ=255)                                                                    cGGAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCCACCCCGTg                           >  2:414876/1‑101 (MQ=255)                                                                     ggAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTgg                          >  1:1616052/1‑101 (MQ=255)                                                                     ggAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGGACAGAATCATCCCTGAAAGACCACCCGCGGCGAACTCGTgg                          >  2:3100083/1‑101 (MQ=37)                                                                      gAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGa                         >  2:1211824/1‑101 (MQ=255)                                                                       aGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGAt                        >  2:2856370/1‑101 (MQ=255)                                                                        cccccc.cGGGGCTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATc                       <  1:3638757/100‑1 (MQ=255)                                                                             gcggggggTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGAt                   <  1:1111588/96‑1 (MQ=255)                                                                             c.cGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGGGGATCAGATg                  >  2:4095146/1‑101 (MQ=255)                                                                               cgcgGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGc                 >  1:3407756/1‑101 (MQ=255)                                                                                 ggggTCCCCGCGGGCCTG.CCCGAGGCGAAATCTCCCCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc               <  1:1898281/100‑1 (MQ=255)                                                                                 cgGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGccc               >  2:1465754/1‑101 (MQ=255)                                                                                  gggTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccg              >  2:3413759/1‑101 (MQ=255)                                                                                   ggTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgc             >  1:3995106/1‑101 (MQ=255)                                                                                   ggTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgc             >  1:906565/1‑101 (MQ=255)                                                                                   ggTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgc             >  1:921770/1‑101 (MQ=255)                                                                                    gTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgcc            >  1:1774422/1‑101 (MQ=255)                                                                                    gTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCccgcc            >  1:1196371/1‑101 (MQ=255)                                                                                      cGCCTCGGGCCTG.CCCAAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGt          >  1:3058234/1‑101 (MQ=255)                                                                                       gCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTc         >  1:672330/1‑101 (MQ=255)                                                                                       gCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTc         >  1:271366/1‑101 (MQ=255)                                                                                         cTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGa       >  1:530413/1‑101 (MQ=255)                                                                                           cGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATc     >  1:3167908/1‑101 (MQ=255)                                                                                            gggCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATcc    >  2:619790/1‑101 (MQ=255)                                                                                            gggCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATcc    >  2:732154/1‑101 (MQ=255)                                                                                              gCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATccgc  >  1:2669147/1‑101 (MQ=255)                                                                                               |                                                                                                     TCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGGCGGAGCCCCC.CGCGGGTCGCCTCGGGCCTG.CCCGAGGCGAAATCTCACCCCTCGAGCCAGTCCAGAATCATCCCTGAAAGCCCATCCGCGGCAACCTCGTGGATCAGATGCCCGCCGTCGATCCGC  >  NC_014034/744716‑744908 Base quality scores:  ATCG  < 3 ≤  ATCG  < 10 ≤  ATCG  < 20 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG