New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	158228 =	65 (0.320)	37 (0.180)	17/194	20.9	0.43	intergenic (+31/‑199)	parC/tuf1	DNA topoisomerase IV subunit A/translation elongation factor Tu
	?	NC_014034	= 2330172	35 (0.170)					intergenic (+147/+165)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

CTGGGCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGG  >  NC_014034/158129‑158321                                                                                                    |                                                                                              cTGGGCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCcgc                                                                                              >  2:2031088/1‑101 (MQ=255)  tGGGCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCcgcg                                                                                             >  1:3511439/1‑101 (MQ=255)  tGGGCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCcgcg                                                                                             <  2:625656/101‑1 (MQ=255)   gggCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCgg                                                                                            <  1:2754677/101‑1 (MQ=255)    gccAAGCGGGCGAGCGACGGTCGGGTGGCGGCGCGCGGTTTGCCGCGCTGCAACCGGTTCACCTGACGGGGTTTCGGGCGCTGCCGCACCCGACACGCggg                                                                                           <  2:2717809/99‑1 (MQ=255)      cAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCCGCCGCGCCCGACCCGCggggg                                                                                         <  1:2400178/101‑1 (MQ=255)        aGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCt                                                                                       <  1:1443798/101‑1 (MQ=255)         gCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTc                                                                                      <  1:3720198/101‑1 (MQ=255)         gCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTc                                                                                      <  1:4138733/101‑1 (MQ=255)          cGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAGCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTcc                                                                                     <  1:2718556/101‑1 (MQ=255)          cGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTcc                                                                                     <  2:531793/101‑1 (MQ=255)           gggCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCcgccgacgggccc                                                                                    >  2:219437/1‑91 (MQ=255)            ggCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGc                                                                                   <  1:875704/101‑1 (MQ=255)             gCGCGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCACGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGTCCTTCCCGCGTTCGCTCCGcc                                                                                  <  2:3511186/101‑1 (MQ=255)              cGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGccc                                                                                 <  1:1590976/101‑1 (MQ=255)               gAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGcccc                                                                                <  2:1454663/101‑1 (MQ=255)                    ccGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAc                                                                           <  1:3735030/101‑1 (MQ=255)                      gggCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAccc                                                                         <  2:516418/101‑1 (MQ=255)                         cGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCAcccccc                                                                      <  1:2873971/101‑2 (MQ=255)                          tgATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCAGCACCCCCgg                                                                     <  1:3970716/100‑1 (MQ=255)                           gATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGc                                                                    <  1:437954/101‑1 (MQ=255)                              ggCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTa                                                                 <  2:2261613/101‑1 (MQ=255)                              ggCGCCGCGCGGTTCCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTa                                                                 <  2:1242703/101‑1 (MQ=255)                              ggCCCCGCGCGGGTTCCCGCGCCACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCCCCCGACCCGCGGGGGCTCCCGCCCCGGACCCCCGGCgga                                                                 <  2:4075815/101‑3 (MQ=255)                               gcgcCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAt                                                                <  1:2292356/101‑1 (MQ=255)                               gcgcCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAt                                                                <  1:133170/101‑1 (MQ=255)                                cgccgcGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAtt                                                               <  1:1132999/101‑1 (MQ=255)                                 gccgcGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAttt                                                              <  2:2516726/101‑1 (MQ=255)                                  ccgcGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAtttt                                                             <  2:228368/101‑1 (MQ=255)                                  ccgcGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTAtttt                                                             <  2:3562982/101‑1 (MQ=255)                                   cgcgcgGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTg                                                            <  1:2031226/101‑1 (MQ=255)                                   cgcgcgGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTg                                                            <  1:3009398/101‑1 (MQ=255)                                        ggTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAg                                                       <  2:702820/101‑1 (MQ=255)                                            tCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaa                                                   <  1:2208524/101‑1 (MQ=255)                                             cccGCGCGACAACCGTTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaaa                                                  <  2:1332295/101‑1 (MQ=255)                                             cccGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaaa                                                  <  1:2908053/101‑1 (MQ=255)                                             cccGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGaaaa                                                  <  1:2619926/101‑1 (MQ=255)                                                 cgcgACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCaa                                              <  2:2034292/101‑1 (MQ=255)                                                 cgcgACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCaa                                              <  1:2708767/101‑1 (MQ=255)                                                    gACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGt                                           <  1:3477323/101‑1 (MQ=255)                                                      cacccGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGCCCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGc                                         <  2:3753061/98‑1 (MQ=255)                                                       aaCCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGcc                                        <  2:3767569/101‑1 (MQ=255)                                                        aggggTTCCCCTGACGGGGGTGCGGGCGCTGCCGCGCCCGCCCCGCGGGGGCTCCGCCCCCGCACGCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGccc                                       <  2:1569950/98‑1 (MQ=37)                                                         ccGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGcccc                                      <  2:3233003/101‑1 (MQ=255)                                                           gtttCCCCTGACGGGGTTTCGGGCGGTGCCGCCCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGcccccc                                    <  1:3964507/99‑1 (MQ=255)                                                           ggTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGcccccc                                    <  2:3986989/101‑1 (MQ=255)                                                            gTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCg                                   <  2:691190/101‑1 (MQ=255)                                                             ttCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCgg                                  <  2:2535233/101‑1 (MQ=255)                                                             ttCCCCGGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCgg                                  <  1:755045/101‑1 (MQ=255)                                                               ccccTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGAc                                <  2:3954211/101‑1 (MQ=255)                                                                 ccTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACgt                              <  1:2412699/101‑1 (MQ=255)                                                                  cTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACgtg                             <  2:3994755/101‑1 (MQ=255)                                                                  cTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACgtg                             <  2:918737/101‑1 (MQ=255)                                                                  cTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACgtg                             <  2:812729/101‑1 (MQ=255)                                                                   tGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACgtgt                            <  2:2209994/101‑1 (MQ=255)                                                                      cGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGt                         <  2:1883179/101‑1 (MQ=255)                                                                             tCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCTCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCgggg                  <  1:3571874/101‑1 (MQ=255)                                                                             tCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCgggg                  <  1:3666088/101‑1 (MQ=255)                                                                                ggCGCTGCCGCGCCCGGCCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGAcg               <  2:3841580/101‑1 (MQ=255)                                                                                ggCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGAcg               <  2:3231975/101‑1 (MQ=255)                                                                                 gcgcGGGCGCGCCCGGCCCGCGGGGGCCCCGCCCCCGGACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGAcgc              <  2:1837796/101‑1 (MQ=38)                                                                                   gcTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGAcgcgc            <  2:3410770/101‑1 (MQ=255)                                                                                   gcTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGAcgcgc            <  1:823773/101‑1 (MQ=255)                                                                                    cTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGAcgcgcg           <  2:3027202/101‑1 (MQ=255)                                                                                       ccGCGGCTGCCCCGCGGGGGCTCCGCCCCCGCTCCCCCGGCGTATTTTGCCAAGGAGAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTg        <  2:2512590/101‑1 (MQ=38)                                                                                       ccGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTg        <  2:2177597/101‑1 (MQ=255)                                                                                        cgcgCCCGACCCGCGGGGGCTCCGCCCCCGCGCCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGc       <  2:2117500/101‑1 (MQ=255)                                                                                             ccGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTgg  <  2:2242647/101‑1 (MQ=255)                                                                                             ccGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTgg  <  2:535078/101‑1 (MQ=255)                                                                                                    |                                                                                              CTGGGCAAGCGGGCGAGCGCCGGGCGGATGGCGCCGCGCGGTTTCCCGCGCGACAACCGGTTCCCCTGACGGGGTTTCGGGCGCTGCCGCGCCCGACCCGCGGGGGCTCCGCCCCCGCACCCCCGGCGTATTTTGCCAAGGAAAAGCAAGGTGCCCCCCGGACGTGTCGTTTCGGGGACGCGCGCTGCCCTGG  >  NC_014034/158129‑158321 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 23 ≤  ATCG  < 32 ≤  ATCG  < 38 ≤  ATCG