New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 74467155 (0.270)19 (0.090) 9/190 25.5 0.27 intergenic (+56/+156) idi2/bchO isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
?NC_014034 2330184 = 48 (0.230)intergenic (+159/+153) RCAP_rcc02161/mrcA hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

ATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCC  >  NC_014034/744571‑744767
                                                                                                         |                                                                                                
atCGAGCAGCACCGCGACATGATCTTTCCGCCGGGGACGGCC.TGAGATTCCGCCCGGGGCGCGCTTGCGCCTGGGGCGACCCG.CC..GGGGGCTCCG.CCCCCg                                                                                                  <  2:3913909/101‑1 (MQ=255)
agggAGCAGCCCCGCGACATGATCTTTCCGCGGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCg                                                                                                  <  2:1284313/98‑1 (MQ=255)
 tggAGCAGCCCCGCGAAATGATCTTCCCGCCGGTGAGGGCC.TGAGATTTCGCCCGGGGCGCGCTGGCGCCCCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCgg                                                                                                 <  2:2584544/99‑1 (MQ=37)
 tggAGCAGCACCGCGACATGATCTTCCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTGGGGCGACCCG.CC..GGGGGCTCCG.CCCCCgg                                                                                                 <  2:1960145/99‑1 (MQ=255)
 ccGACCAGCACCGCGACAGGTTCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGTTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCgg                                                                                                 <  2:1299967/100‑1 (MQ=38)
   gaccacccccGCGACTTGATCTTCCCGCGGGTGCCGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGAc                                                                                               <  2:3165764/93‑1 (MQ=18)
   gAGCAGCCCCGCGACATGATTTTTCCGCCGGGGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGAc                                                                                               <  2:1240210/101‑1 (MQ=38)
       agcccggcgACATGATCTTCCCGCCGGTGCCGGCC.GGAGTTTTCGCCCGGGGCGCGTTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGAccccc                                                                                           <  2:1530066/95‑1 (MQ=25)
       agccCCGGGACATGATCTTCCCGCCGGTGCCGGCC.TGAGATTCCGCCGGGGGCGCGCTTGCGCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGAccccc                                                                                           <  1:532741/101‑1 (MQ=21)
       acccccGCTAAATGATTTTTCCGCCGGTGCGGGCC.TGAGTTTTCGCCCGGGGCGCGTTTGCGCCTGGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGAccccc                                                                                           <  2:2540320/97‑1 (MQ=21)
         ccccGCGACAGGTTCTTCCCGCCGGTGGCGGCC.TGGGATTTCGCCGGGGGCGCGCTGGCGCCGGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCgg                                                                                         <  1:574524/99‑1 (MQ=21)
          cccGCGACATGATCTTCCCGCGGGTGACGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCggg                                                                                        <  1:1293307/100‑1 (MQ=25)
          cccGCGACATGATCTTCCCGCCGGTGCCGGCC.TGAGTTTCCGCCCGGGGCGCGCTTGCCCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCggg                                                                                        <  1:3342379/100‑1 (MQ=37)
             cggcatggcccTTCCCGCCGGTGACGCCC.GGACATTCCGCCCGGGGCGCGCTGGCGCCGCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGata                                                                                     <  1:4232588/91‑1 (MQ=18)
              cgACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCC..GCGGGACCCC.CCCCCGGCccccccgccag                                                                                     >  1:593753/1‑95 (MQ=255)
              cgACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGGTCCGCCCCCCGGCCCCCCggggct                                                                                     >  2:1831135/1‑98 (MQ=38)
               gACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CCCGGGGGGCGCGC.CCCCCCGCCCCCCggggcg                                                                                     >  1:271402/1‑98 (MQ=255)
                 ctggttCTTCCCGCGGGTG.CGGCCGTGAGATTGCCCCGGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTg                                                                                 <  1:2916727/96‑1 (MQ=12)
                   tgttCTTCCCGCGGGTGCGGGCG.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCGGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTggg                                                                               <  1:2934559/98‑1 (MQ=18)
                      tctccccgcggGGGACGGCC.TGAGTTTCCGCCCGGGGCTCGCTTGCGCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCa                                                                            <  1:579974/96‑1 (MQ=21)
                      tctccccgccgGCGGCGCCT.GGAGTTTCCGCCGGGGGCGCCCTGGCGCCCGGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCa                                                                            <  1:2105134/96‑1 (MQ=9)
                        tttCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCCGGCCCCCGGGGTATTTGGGGGAAg                                                                          >  2:1159268/1‑101 (MQ=37)
                          tCCGCGGGGGAGGGCC.TGAATTTCCCCCCGGGGCCCGCTTCCGCCGCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGat                                                                        <  2:3894313/101‑1 (MQ=17)
                           ccggcgGTGACGGCC.GGGGTTTCCGCGCGGGGCGCGTTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatg                                                                       <  2:1517523/101‑1 (MQ=18)
                           ccgccgGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCC..GGGGGGCCCC.CCCCCCCCCCCCCGGGGGATTTtgggggagag                                                                        >  1:2473119/1‑95 (MQ=255)
                            cgccgTTGACGCCC.GGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatga                                                                      <  2:2388024/101‑1 (MQ=21)
                                ggggccGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatg                                                                  <  1:2411677/96‑1 (MQ=21)
                                ggTGCCGCCG.TGAGATTGCGCCGGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatg                                                                  <  2:3829964/101‑1 (MQ=18)
                                 gTGCCGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatga                                                                 <  1:183849/101‑1 (MQ=21)
                                    gcGGCC.TGAGATTCCGCCGGGGGCGCGCTTGCGCCGCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                                              <  1:3389211/100‑1 (MQ=21)
                                    aCGGCC.TGAGTTCGCGCCGGGGGCGCCCCCGCCCGGGGCGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                                              <  2:3550350/101‑1 (MQ=9)
                                      ggCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CCG.GGGGGCCCCG.CCCCGGGCCCCCCGGG.GATTTGGGGCCAGatggaaaggattac                                                            >  1:1235267/1‑93 (MQ=25)
                                         ccggagtTTTCGCCGGGGGCGCGGTTGCCCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACtt                                                          <  1:2383970/98‑1 (MQ=18)
                                           tGAGTTTTCGCCGGGGGCGCGCTTGCGCCGCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTc                                                        <  1:3031199/101‑1 (MQ=21)
                                           tGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTc                                                        <  1:916986/101‑1 (MQ=21)
                                           tGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGGTCCG.CCCCCCGACCCCCCGGGGATTTTGGGGAAGATGAAAAGAAAGAATTTc                                                        >  2:3480757/1‑101 (MQ=21)
                                                  tCGCCGGGGGCGCGCTTGCGCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                                                 <  2:3922010/101‑1 (MQ=255)
                                                  ccGCCCGGGGCGCGCTGGCCCCGCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                                                 <  2:770957/100‑1 (MQ=255)
                                                   cGCGCGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgcg                                                <  1:3481009/101‑1 (MQ=21)
                                                        ggggGGCGCTGGCCCCCGGGGCCTCCCG.CC..GGGGGCTCCT.CCCCCGGACCCCCGGGATATTGGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGt                                           <  2:462184/101‑1 (MQ=18)
                                                          ggccccctcgcgcCCCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTAc                                         <  2:1523525/92‑1 (MQ=21)
                                                           gccctctgccgcCTCGGGCCCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACa                                        <  2:1518883/92‑1 (MQ=21)
                                                                cTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTg                                   <  1:1000198/101‑1 (MQ=255)
                                                                 tgccgcCGCGGGCCCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGt                                  <  2:258906/98‑1 (MQ=25)
                                                                     cccgcGGCCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCa                              <  1:2623875/97‑1 (MQ=255)
                                                                        tggggCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCAccc                           <  2:3949053/99‑1 (MQ=255)
                                                                           ggCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTg                        <  1:1159362/101‑1 (MQ=255)
                                                                            gccccccG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGc                       <  2:3150801/97‑1 (MQ=255)
                                                                             cGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTgat                      <  1:785972/101‑3 (MQ=255)
                                                                                      c..gGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg              <  2:1235171/101‑1 (MQ=255)
                                                                                      c..gGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg              <  2:824596/101‑1 (MQ=255)
                                                                                      c..gGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg              <  1:440705/101‑1 (MQ=255)
                                                                                      c..gGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg              >  1:2150029/1‑101 (MQ=255)
                                                                                         gggggCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTgg             <  2:966107/101‑1 (MQ=255)
                                                                                          ggggCTACG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGc            <  2:163771/101‑1 (MQ=255)
                                                                                           gggCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCa           <  1:2876660/101‑1 (MQ=255)
                                                                                              cTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCaaaa        <  1:3132795/101‑1 (MQ=255)
                                                                                               tCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAAt       <  1:1388731/101‑1 (MQ=255)
                                                                                               tCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAAt       <  1:727848/101‑1 (MQ=255)
                                                                                               tCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAAt       <  1:74741/101‑1 (MQ=255)
                                                                                                 cG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATAc     <  2:1729590/101‑1 (MQ=255)
                                                                                                     ccccGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGcc  <  2:330489/101‑1 (MQ=255)
                                                                                                         |                                                                                                
ATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCC  >  NC_014034/744571‑744767

Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG