New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744683	44 (0.240)	34 (0.180)	24/174	15.7	0.48	intergenic (+68/+144)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	= 2330277	31 (0.150)					intergenic (+252/+60)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

GCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGG  >  NC_014034/744584‑744782                                                                                                       |                                                                                                    cggcatggcccTTCCCGCCGGTGACGCCC.GGACATTCCGCCCGGGGCGCGCTGGCGCCGCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGata                                                                                                    <  1:4232588/91‑1 (MQ=18)     ctggttCTTCCCGCGGGTG.CGGCCGTGAGATTGCCCCGGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTg                                                                                                <  1:2916727/96‑1 (MQ=12)       tgttCTTCCCGCGGGTGCGGGCG.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCGGGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTggg                                                                                              <  1:2934559/98‑1 (MQ=18)          tctccccgcggGGGACGGCC.TGAGTTTCCGCCCGGGGCTCGCTTGCGCCTGGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCa                                                                                           <  1:579974/96‑1 (MQ=21)          tctccccgccgGCGGCGCCT.GGAGTTTCCGCCGGGGGCGCCCTGGCGCCCGGGGCGACCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCa                                                                                           <  1:2105134/96‑1 (MQ=9)            tttCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC.GGGGGCTCCGCCCCCCGGCCCCCGGGGTATTTGGGGGAAg                                                                                         >  2:1159268/1‑101 (MQ=37)              tCCGCGGGGGAGGGCC.TGAATTTCCCCCCGGGGCCCGCTTCCGCCGCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGat                                                                                       <  2:3894313/101‑1 (MQ=17)               ccggcgGTGACGGCC.GGGGTTTCCGCGCGGGGCGCGTTTGCGCCTCGGGCGACCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatg                                                                                      <  2:1517523/101‑1 (MQ=18)               ccgccgGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCC.GGGGGGCCCCCCCCCCCCCCCCCGGGGGATTTtgggggagag                                                                                       >  1:2473119/1‑95 (MQ=255)                cgccgTTGACGCCC.GGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatga                                                                                     <  2:2388024/101‑1 (MQ=21)                    ggggccGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatg                                                                                 <  1:2411677/96‑1 (MQ=21)                    ggTGCCGCCG.TGAGATTGCGCCGGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatg                                                                                 <  2:3829964/101‑1 (MQ=18)                     gTGCCGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatga                                                                                <  1:183849/101‑1 (MQ=21)                        gcGGCC.TGAGATTCCGCCGGGGGCGCGCTTGCGCCGCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                                                             <  1:3389211/100‑1 (MQ=21)                        aCGGCC.TGAGTTCGCGCCGGGGGCGCCCCCGCCCGGGGCGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                                                             <  2:3550350/101‑1 (MQ=9)                          ggCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CCGGGGGGCCCCGCCCCGGGCCCCCCGGG.GATTTGGGGCCAGatggaaaggattac                                                                           >  1:1235267/1‑93 (MQ=25)                             ccggagtTTTCGCCGGGGGCGCGGTTGCCCCTGGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACtt                                                                         <  1:2383970/98‑1 (MQ=18)                               tGAGTTTTCGCCGGGGGCGCGCTTGCGCCGCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTc                                                                       <  1:3031199/101‑1 (MQ=21)                               tGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTc                                                                       <  1:916986/101‑1 (MQ=21)                               tGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC.GGGGGGTCCGCCCCCCGACCCCCCGGGGATTTTGGGGAAGATGAAAAGAAAGAATTTc                                                                       >  2:3480757/1‑101 (MQ=21)                                      tCGCCGGGGGCGCGCTTGCGCCTGGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                                                                <  2:3922010/101‑1 (MQ=255)                                      ccGCCCGGGGCGCGCTGGCCCCGCGGGCGACCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                                                                <  2:770957/100‑1 (MQ=255)                                       cGCGCGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgcg                                                               <  1:3481009/101‑1 (MQ=21)                                            ggggGGCGCTGGCCCCCGGGGCCTCCCG.CC.GGGGGCTCCTCCCCCGGACCCCCGGGATATTGGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGt                                                          <  2:462184/101‑1 (MQ=18)                                              ggccccctcgcgcCCCGGGCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTAc                                                        <  2:1523525/92‑1 (MQ=21)                                               gccctctgccgcCTCGGGCCCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACa                                                       <  2:1518883/92‑1 (MQ=21)                                                    cTTGCGCCTCGGGCGACCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTg                                                  <  1:1000198/101‑1 (MQ=255)                                                     tgccgcCGCGGGCCCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGt                                                 <  2:258906/98‑1 (MQ=25)                                                         cccgcGGCCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCa                                             <  1:2623875/97‑1 (MQ=255)                                                            tggggCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCAccc                                          <  2:3949053/99‑1 (MQ=255)                                                               ggCGCCCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTg                                       <  1:1159362/101‑1 (MQ=255)                                                                gccccccG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGc                                      <  2:3150801/97‑1 (MQ=255)                                                                 cGACCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTgat                                     <  1:785972/101‑3 (MQ=255)                                                                          c.gGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg                             <  2:824596/101‑1 (MQ=255)                                                                          c.gGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg                             >  1:2150029/1‑101 (MQ=255)                                                                          c.gGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg                             <  2:1235171/101‑1 (MQ=255)                                                                          c.gGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg                             <  1:440705/101‑1 (MQ=255)                                                                            gggggCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTgg                            <  2:966107/101‑1 (MQ=255)                                                                             ggggCTACGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGc                           <  2:163771/101‑1 (MQ=255)                                                                              gggCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCa                          <  1:2876660/101‑1 (MQ=255)                                                                                 cTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCaaaa                       <  1:3132795/101‑1 (MQ=255)                                                                                  tCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAAt                      <  1:74741/101‑1 (MQ=255)                                                                                  tCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAAt                      <  1:727848/101‑1 (MQ=255)                                                                                  tCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAAt                      <  1:1388731/101‑1 (MQ=255)                                                                                    cGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATAc                    <  2:1729590/101‑1 (MQ=255)                                                                                       ccccGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGcc                 <  2:330489/101‑1 (MQ=255)                                                                                               ccccGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCCCCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTg         <  2:593689/101‑1 (MQ=255)                                                                                               ccccGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTg         <  1:536319/101‑1 (MQ=255)                                                                                               ccccGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTg         <  2:2472935/101‑1 (MQ=255)                                                                                                cccGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGc        <  1:1831255/101‑1 (MQ=255)                                                                                                      atatTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCgggggg  <  2:2107862/101‑1 (MQ=255)                                                                                                       |                                                                                                    GCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC.GGGGGCTCCGCCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGGCAAAATACGCCGGGGGGTGCGGGGGG  >  NC_014034/744584‑744782 Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG