New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 2070649	53 (0.250)	17 (0.080)	7/198	27.7	0.27	intergenic (+64/+108)	dcd/guaB	deoxycytidine triphosphate deaminase/inosine‑5'‑monophosphate dehydrogenase
	?	NC_014034	= 2330290	39 (0.180)					intergenic (+265/+47)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

GGCTGAAGCTCGCCAAGCATTTCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCC.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGCGC  >  NC_014034/2070551‑2070749                                                                                                       |                                                                                                      gccTGAAGCCCGCCAAGCTTTCCGGGGGGGGGGGGGGGG.CGCGGGGTGGGTTTCCGCCGCGGTTTG.CCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCg                                                                                                      <  2:1028199/99‑1 (MQ=255)  gCTGACGCCCGCCACGCTTTCCCGGGGGGGGGGGGGGG.CGGGGGGGGGGTTTCCGCCGGGTTTTT.GCCTGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCgg                                                                                                     <  2:4031710/101‑1 (MQ=255)     gacgccccccAGGCTTTCCCGGGGGGGGGGGGGGG.CGGGGGGAGGGTTTTCGCGGGGGTTTT.GCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGAcc                                                                                                  <  1:590753/93‑1 (MQ=255)         cccGCCAAGCTTTCCGGGGGGGGGGGGGGGG.CGGGCGGTTGCTTTCCGCCG.GGTTTT.TCCCGCGGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGAcccccc                                                                                              <  2:2136990/99‑1 (MQ=2)          ccGCCAAGCTTTGCCGGGGGGGGGGGGGGG.CGGGGGGATGGTTTCCGCGGCTGTTTT.CCCTGC.GCCACCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCg                                                                                             <  2:3941462/100‑1 (MQ=9)            cccAAGCTTTTCCGGGGGGGGGGGGGGG.GGCGGGGAGGTTTTCCGCCGCGGTTTC.CCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCggg                                                                                           <  1:3070898/100‑1 (MQ=12)              cAAGCCTTTCGGGGGGGGGGGGGGGG.CGCGCGGGGGGTTTCCCCCGCGGTTTT.CCCTGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGat                                                                                         <  1:3403679/101‑1 (MQ=16)               caGCCTTTCCGGGGGGGGGGGGGGGCCCCGGGGATGGTTTCCGCCGGGCTTTT.GCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGat                                                                                         <  2:17531/100‑1 (MQ=12)                   gttcccggggggggTGGGGGG.CGGGGGGTTGGTTCCCCCCGGGGTTTT.GCCCGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATAtttt                                                                                    <  2:827543/91‑1 (MQ=9)                    tttCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCCGGGGGGGGCGGCCCCCCCGCCCCCCCCGGGCAttttt                                                                                   >  2:2042368/1‑100 (MQ=25)                        gggggggggGGGGGGG.GGCGCGGGTTGTTTCCGCCGGGTTTTT.GCCGGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCa                                                                               <  1:122586/96‑1 (MQ=9)                          ggcgGGGGGGGGGG.CGCGCGTATGGTTCCCGCCGCGTCTTG.GCCGGC.GCCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAg                                                                             <  2:112545/100‑1 (MQ=12)                              gggggggggg.GGCGCGGTTGGTTTCCGCCGCGGCTTG.CCCGGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGa                                                                         <  1:2963998/95‑1 (MQ=12)                                        ggggcggggtgggtTTCCCCGGCGCTTTGGCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAg                                                                 <  1:2538679/92‑1 (MQ=12)                                           cgcgGGTGGTTTCCGCCGCGGTTTC.GCGGGC.GCCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGgt                                                             <  2:439803/101‑1 (MQ=17)                                                ttggttTCCGCCGCGGCTTG.CCCGGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTg                                                        <  2:513793/100‑1 (MQ=18)                                                 ttgttctCGCCGGGGCTTC.GCCGGC.GCCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTCGc                                                       <  1:804434/95‑1 (MQ=17)                                                 tggttccccccgcGTCTTC.GCCTGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGc                                                       <  1:804435/92‑1 (MQ=18)                                                   gttccccccgcGTCTTC.GCCCGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCg                                                     <  1:1263605/94‑1 (MQ=21)                                                             cttcTTT.GCCTGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.aa                                          <  2:3737758/98‑1 (MQ=25)                                                                      ccggc.ggccCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGcc                                  <  1:121700/98‑1 (MQ=25)                                                                      cccgc.ggccCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGcc                                  <  2:1728311/98‑1 (MQ=25)                                                                        cgcgccccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCg                                 <  1:2995924/92‑1 (MQ=25)                                                                          c.ggcgCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCgggg                              <  1:2240803/101‑1 (MQ=255)                                                                              ccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGttt                           <  2:1132203/98‑1 (MQ=255)                                                                              ccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGttt                           <  2:3963851/98‑1 (MQ=255)                                                                                ccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTcc                         <  1:1627902/100‑1 (MQ=255)                                                                                   cgccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTccccc                      <  2:3220148/96‑1 (MQ=255)                                                                                   cgccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTccccc                      <  1:2042506/96‑1 (MQ=255)                                                                                    gccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCg                     <  2:3603934/97‑1 (MQ=255)                                                                                    gccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCg                     <  2:434607/97‑1 (MQ=255)                                                                                    gccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCg                     <  1:1021121/97‑1 (MQ=255)                                                                                        gggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGccc                 <  1:1096821/101‑1 (MQ=255)                                                                                        gggggCGCTGCCCCCCCGGCCCCCCGGGAAATTTTCGGCAAGATGAAAGGGGAGCGGCGTTTTCCGGGGCACAGAAAAAAGGGGCGGGGTTCccccagacc                  >  2:3971646/1‑96 (MQ=9)                                                                                         ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTGTCCCCCGGCCCt                >  1:4075478/1‑101 (MQ=255)                                                                                         ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGGTTCCCCCGGCCCt                >  1:1621999/1‑101 (MQ=255)                                                                                            gcgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTtgt             <  2:3005702/101‑1 (MQ=255)                                                                                             cgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTtgtg            <  2:763669/101‑1 (MQ=255)                                                                                             cgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTtgtg            <  1:188254/101‑1 (MQ=255)                                                                                               cTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGTCCCTTGTGAt          >  1:3706531/1‑101 (MQ=255)                                                                                                tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt         >  2:3475817/1‑101 (MQ=255)                                                                                                tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt         >  2:770611/1‑101 (MQ=255)                                                                                                tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt         >  2:3003600/1‑101 (MQ=255)                                                                                                tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt         >  2:283153/1‑101 (MQ=255)                                                                                                tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt         <  2:831875/101‑1 (MQ=255)                                                                                                 gCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAttt        <  2:1164005/101‑1 (MQ=255)                                                                                                 gCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGGTTCCCCCGGCCCTTGTGCttt        >  2:2467899/1‑101 (MQ=255)                                                                                                  ccccccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGGGGTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTc       >  1:2840588/1‑101 (MQ=255)                                                                                                   cccccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCt      >  1:2134232/1‑101 (MQ=255)                                                                                                    ccccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTg     >  2:116362/1‑101 (MQ=255)                                                                                                     cccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgc    >  2:2845910/1‑101 (MQ=255)                                                                                                       cGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcgc  >  2:3894830/1‑101 (MQ=255)                                                                                                       cGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcgc  >  2:3246038/1‑101 (MQ=255)                                                                                                       cGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcgc  >  2:1828189/1‑101 (MQ=255)                                                                                                       |                                                                                                      GGCTGAAGCTCGCCAAGCATTTCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCC.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGCGC  >  NC_014034/2070551‑2070749 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG