New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	2070653 =	50 (0.300)	79 (0.470)	19/160	16.6	0.76	intergenic (+68/+104)	dcd/guaB	deoxycytidine triphosphate deaminase/inosine‑5'‑monophosphate dehydrogenase
	?	NC_014034	= 2600949	0 (0.000)					intergenic (+11/‑130)	RCAP_rcc02424/surE	short‑chain dehydrogenase/reductase family oxidoreductase/5'‑nucleotidase SurE
Rejected: Position hash score below cutoff.

GAAGCTCGCCAAGCATTTCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCC.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGCGCCG  >  NC_014034/2070555‑2070751                                                                                                       |                                                                                                    gacgccccccAGGCTTTCCCGGGGGGGGGGGGGGG.CGGGGGGAGGGTTTTCGCGGGGGTTTT.GCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGAcc                                                                                                    <  1:590753/93‑1 (MQ=255)     cccGCCAAGCTTTCCGGGGGGGGGGGGGGGG.CGGGCGGTTGCTTTCCGCCG.GGTTTT.TCCCGCGGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGAcccccc                                                                                                <  2:2136990/99‑1 (MQ=2)      ccGCCAAGCTTTGCCGGGGGGGGGGGGGGG.CGGGGGGATGGTTTCCGCGGCTGTTTT.CCCTGC.GCCACCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCg                                                                                               <  2:3941462/100‑1 (MQ=9)        cccAAGCTTTTCCGGGGGGGGGGGGGGG.GGCGGGGAGGTTTTCCGCCGCGGTTTC.CCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCggg                                                                                             <  1:3070898/100‑1 (MQ=12)          cAAGCCTTTCGGGGGGGGGGGGGGGG.CGCGCGGGGGGTTTCCCCCGCGGTTTT.CCCTGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGat                                                                                           <  1:3403679/101‑1 (MQ=16)           caGCCTTTCCGGGGGGGGGGGGGGGCCCCGGGGATGGTTTCCGCCGGGCTTTT.GCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGat                                                                                           <  2:17531/100‑1 (MQ=12)               gttcccggggggggTGGGGGG.CGGGGGGTTGGTTCCCCCCGGGGTTTT.GCCCGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATAtttt                                                                                      <  2:827543/91‑1 (MQ=9)                tttCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCCGGGGGGGGCGGCCCCCCCGCCCCCCCCGGGCAttttt                                                                                     >  2:2042368/1‑100 (MQ=25)                    gggggggggGGGGGGG.GGCGCGGGTTGTTTCCGCCGGGTTTTT.GCCGGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCa                                                                                 <  1:122586/96‑1 (MQ=9)                      ggcgGGGGGGGGGG.CGCGCGTATGGTTCCCGCCGCGTCTTG.GCCGGC.GCCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAg                                                                               <  2:112545/100‑1 (MQ=12)                          gggggggggg.GGCGCGGTTGGTTTCCGCCGCGGCTTG.CCCGGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGa                                                                           <  1:2963998/95‑1 (MQ=12)                                    ggggcggggtgggtTTCCCCGGCGCTTTGGCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAg                                                                   <  1:2538679/92‑1 (MQ=12)                                       cgcgGGTGGTTTCCGCCGCGGTTTC.GCGGGC.GCCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGgt                                                               <  2:439803/101‑1 (MQ=17)                                            ttggttTCCGCCGCGGCTTG.CCCGGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTg                                                          <  2:513793/100‑1 (MQ=18)                                             ttgttctCGCCGGGGCTTC.GCCGGC.GCCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTCGc                                                         <  1:804434/95‑1 (MQ=17)                                             tggttccccccgcGTCTTC.GCCTGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGc                                                         <  1:804435/92‑1 (MQ=18)                                               gttccccccgcGTCTTC.GCCCGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCg                                                       <  1:1263605/94‑1 (MQ=21)                                                         cttcTTT.GCCTGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.aa                                            <  2:3737758/98‑1 (MQ=25)                                                                  ccggc.ggccCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGcc                                    <  1:121700/98‑1 (MQ=25)                                                                  cccgc.ggccCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGcc                                    <  2:1728311/98‑1 (MQ=25)                                                                    cgcgccccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCg                                   <  1:2995924/92‑1 (MQ=25)                                                                      c.ggcgCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCgggg                                <  1:2240803/101‑1 (MQ=255)                                                                          ccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGttt                             <  2:1132203/98‑1 (MQ=255)                                                                          ccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGttt                             <  2:3963851/98‑1 (MQ=255)                                                                            ccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTcc                           <  1:1627902/100‑1 (MQ=255)                                                                               cgccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTccccc                        <  2:3220148/96‑1 (MQ=255)                                                                               cgccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTccccc                        <  1:2042506/96‑1 (MQ=255)                                                                                gccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCg                       <  2:3603934/97‑1 (MQ=255)                                                                                gccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCg                       <  2:434607/97‑1 (MQ=255)                                                                                gccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCg                       <  1:1021121/97‑1 (MQ=255)                                                                                    gggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGccc                   <  1:1096821/101‑1 (MQ=255)                                                                                    gggggCGCTGCCCCCCCGGCCCCCCGGGAAATTTTCGGCAAGATGAAAGGGGAGCGGCGTTTTCCGGGGCACAGAAAAAAGGGGCGGGGTTCccccagacc                    >  2:3971646/1‑96 (MQ=9)                                                                                     ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTGTCCCCCGGCCCt                  >  1:4075478/1‑101 (MQ=255)                                                                                     ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGGTTCCCCCGGCCCt                  >  1:1621999/1‑101 (MQ=255)                                                                                        gcgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTtgt               <  2:3005702/101‑1 (MQ=255)                                                                                         cgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTtgtg              <  2:763669/101‑1 (MQ=255)                                                                                         cgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTtgtg              <  1:188254/101‑1 (MQ=255)                                                                                           cTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGTCCCTTGTGAt            >  1:3706531/1‑101 (MQ=255)                                                                                            tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt           <  2:831875/101‑1 (MQ=255)                                                                                            tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt           >  2:770611/1‑101 (MQ=255)                                                                                            tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt           >  2:283153/1‑101 (MQ=255)                                                                                            tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt           >  2:3003600/1‑101 (MQ=255)                                                                                            tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt           >  2:3475817/1‑101 (MQ=255)                                                                                             gCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAttt          <  2:1164005/101‑1 (MQ=255)                                                                                             gCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGGTTCCCCCGGCCCTTGTGCttt          >  2:2467899/1‑101 (MQ=255)                                                                                              ccccccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGGGGTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTc         >  1:2840588/1‑101 (MQ=255)                                                                                               cccccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCt        >  1:2134232/1‑101 (MQ=255)                                                                                                ccccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTg       >  2:116362/1‑101 (MQ=255)                                                                                                 cccGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgc      >  2:2845910/1‑101 (MQ=255)                                                                                                   cGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcgc    >  2:3894830/1‑101 (MQ=255)                                                                                                   cGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcgc    >  2:3246038/1‑101 (MQ=255)                                                                                                   cGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTgcgc    >  2:1828189/1‑101 (MQ=255)                                                                                                    ggACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGcgcc   >  2:3213660/1‑101 (MQ=255)                                                                                                     gACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGcgccg  >  2:387378/1‑101 (MQ=255)                                                                                                     gACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGcgccg  >  2:3868401/1‑101 (MQ=255)                                                                                                     gACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGcgccg  <  1:1829563/101‑1 (MQ=255)                                                                                                     gACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGcgccg  >  1:608039/1‑101 (MQ=255)                                                                                                     gACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGcgccg  <  2:885741/101‑1 (MQ=255)                                                                                                       |                                                                                                    GAAGCTCGCCAAGCATTTCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCC.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATTTCTGCGCCG  >  NC_014034/2070555‑2070751 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG