New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 392468	21 (0.110)	55 (0.300)	32/174	12.5	0.84	intergenic (‑116/+27)	RCAP_rcc00363/trmD	hypothetical protein/tRNA (guanine‑N1)‑methyltransferase
	?	NC_014034	2880583 =	0 (0.000)					coding (1002/1053 nt)	pdxA	4‑hydroxythreonine‑4‑phosphate dehydrogenase
Rejected: Position hash score below cutoff.

GTCACCGCGCAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAT  >  NC_014034/392368‑392567                                                                                                            |                                                                                                      gTCACCGCGCAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.c...gg.cgg                                                                                                       >  1:3517381/1‑101 (MQ=255)    aCCGCGCAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.Cggggg                                                                                                    >  2:1959911/1‑99 (MQ=255)        cgcAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.Cgggggggcc                                                                                                >  2:156752/1‑95 (MQ=255)         gcAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.Cggggggccgc                                                                                               >  2:2277071/1‑94 (MQ=255)         gcAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.Cggggggccgc                                                                                               >  1:3166499/1‑94 (MQ=255)           aaGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.Cgggggggcgcgg                                                                                             >  2:570466/1‑92 (MQ=255)              acctgtggggccAAACCGGGAGGGAAATGGGCGGGCCTTTTCATTTTCCCTAAAATACCCGGGGGGCC.CGGGGGCGGACCCCC.C...GG.CGGGTCG.CCTCGgcg                                                                                          <  2:2779980/91‑1 (MQ=12)                       cccAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGGG.GCCCGgcgcgccgcgggg                                                                                >  2:4065/1‑92 (MQ=18)                        caaaccc.GGAGGAAAAAGGGCAGCCCTTTTCATCTTGCCTAAAATACCCGGGGGGCC.GGGGGGCGGACCCCC.C...GG.CGGGTCG.CCTCGGCGCAGCCGAGGCg                                                                               <  2:2736318/96‑1 (MQ=16)                                 gAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGGG.CCCCGGCGCGGCCGGgggggaaaaaac                                                                       >  1:2240591/1‑91 (MQ=18)                                  aGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGGG.CCCCGGCGCGGCCCCGGCGgaaaacaac                                                                      >  2:2111482/1‑95 (MQ=18)                                             cAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGGG.CGCCGGCGCCGCCGCGGCGGGAACAACTGCCGAACCtc.t                                                          >  2:15990/1‑101 (MQ=14)                                                       cATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGCG.GCCCGGGGGCGCCCGGGGGGAAACACCTGGCCAACCTC.Tcccccccacc                                                >  1:3145008/1‑94 (MQ=2)                                                          cTTGCCCCAAAAGCCCCGGGGGGCGGGGGGGGGGCCCCCC.C...GG.CGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCg                                              <  1:1251340/101‑1 (MQ=21)                                                          attctcgcAAAAATCCCGGGGGGG.GGGGGGGGGCGCCCC.CCCGGG.CGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATc                                                <  1:1960037/94‑1 (MQ=16)                                                                  aaaTATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGCG.CCCCGGGGCCGCCGAGGGGGAAAAAACTGCCGGACTTC.TCCCCCCAAACCCgccccccgc                                     >  1:4106576/1‑98 (MQ=9)                                                                    atatCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGCG.GCCCGGCGCCGGCGGGGGGGAAACACCTTCCGCACTTCTTCCCCCAAACCAGCCCCCCggcc                                    >  2:3848414/1‑99 (MQ=2)                                                                         ccGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGGGGCCCCCGGGGCGCCCGGGGGGAAA.AACTTTCCGGACTTC.TTCCCCCAAACCCCCCGCCGGGCCcccgc                              >  1:2598675/1‑100 (MQ=0)                                                                           gggggCC.GGGGGGCCGCCCCCCGC...GGCCGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGt                              <  1:1618841/101‑1 (MQ=25)                                                                             gggTC.CGGGGGCGGAGCCCC.C...GG.CGGGGGG.GCCCGGGGCAGGCGGGGGGGAAACACCTTCCGAACTTC.TCCCCCAAAACCCGCCCCCCGGCCcccgcccca                          >  1:1635740/1‑96 (MQ=9)                                                                                   cGGGGGCGGAGCCCC.C...GG.CGGGGCG.CCCCCGCGCCGCCCAGGCGAAAACACCTGCCCAACTTC.TCCCACAAAACCCGCCCCCCGGGCcgcggccaaccctc                     >  2:1832246/1‑91 (MQ=16)                                                                                      gggCGGAGCCCC.C...GG.CGGGGGG.CCCCCGCGCCGCCGCGGGGGAAACACCTGCCGAACTTC.TCCCCCACAACCCGCCCCCCGGCCCGCCCCCAAGCCTCGcc                  >  2:36180/1‑100 (MQ=255)                                                                                      gggCGGAGCCCC.C...GG.CGGGGCG.GCCCGGCGCCGCCGCGGGGGAAAAACTTGCCGCACTTC.TCCCCCCAATACCGCCGCCGGCCCCCCGCCCAAGCCTCCct                  >  2:3416779/1‑101 (MQ=255)                                                                                       gggcccccccc.g...GG.CGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGctc                 <  2:3068219/94‑1 (MQ=255)                                                                                        ggggcccccc.g...GG.CGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGctct                <  2:2461004/95‑1 (MQ=255)                                                                                         cGGAGCCCC.C...GG.CGGGGCG.CCCCGGCGCAGCCCGGGCGGAAACAATTGCCGAACTTC.TCCCCCAAAACCCGCCCCCCGCCCCCCGCCCAACATTCCctctc               >  2:2059887/1‑100 (MQ=255)                                                                                                    ccggg.cggGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTcgc        <  1:3518922/98‑1 (MQ=255)                                                                                                        g.cggGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCgccgcc    >  2:2445067/1‑101 (MQ=255)                                                                                                           gggTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAt  >  2:3255043/1‑101 (MQ=255)                                                                                                            |                                                                                                      GTCACCGCGCAAGACTATGCGGCCCAAACC.GGAGGGACAATGGCAGGCCATTTCATCTTGCCTCAAATATCCCGGGGGTC.CGGGGGCGGAGCCCC.C...GG.CGGGTCG.CCTCGGCGCAGCCGAGGCGAAATCACTTGCCGAACTTC.TCCCACAAATCCGGCCGCCGGTCCCGCGTCAAAGCTTCGCTCTGCGCTCGCCGCCAT  >  NC_014034/392368‑392567 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG