New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 744653 =62 (0.310)37 (0.190) 5/188 28.6 0.42 intergenic (+38/+174) idi2/bchO isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
?NC_014034 = 3701428 40 (0.190)intergenic (+5/+44) grpE/mutS GrpE protein/DNA mismatch repair protein MutS
Rejected: Position hash score below cutoff.

CCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCT  >  NC_014034/744553‑744747
                                                                                                     |                                                                                                  
cccTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACccg                                                                                                    <  1:597741/101‑1 (MQ=255)
cccTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACccg                                                                                                    >  1:2108000/1‑101 (MQ=255)
 ccTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACccg.c                                                                                                  <  1:3390184/101‑1 (MQ=255)
  cTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCCTGCGCCTCGGGCGACccg.cc                                                                                                 >  2:183811/1‑101 (MQ=255)
    gccTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTGCGGCGGGTGACGGCC.TGAGATTTCGCCGGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..gg                                                                                             <  2:2639892/99‑1 (MQ=255)
     gCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGGGCTTGCGCCTCGGGCGACccg.ccccc                                                                                              >  1:3550603/1‑98 (MQ=255)
      cTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACccg.cccccc                                                                                             >  1:1523629/1‑97 (MQ=255)
      cTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..gggg                                                                                           >  2:536255/1‑101 (MQ=255)
       tCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..ggggg                                                                                          >  1:3922270/1‑101 (MQ=255)
       tCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..ggggg                                                                                          >  1:657363/1‑101 (MQ=255)
         aaGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCGGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCt                                                                                        <  1:3844779/101‑1 (MQ=255)
          ataTCTATATCGAGCAGCACCGCGACATTATCTTTCCGCCGGTGACGGCC.TGAGATTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTc                                                                                       <  2:3421369/99‑1 (MQ=255)
           gATCTATATCGAGCAGCACCGCGACATGATCTTCCCGCCGGTGACGGCC.TGAGATTTCGCCGGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTcc                                                                                      <  1:2085932/101‑1 (MQ=255)
              cTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTNCGCCTCGGGCGACCCG.CC..cgggggggcgcc                                                                                   >  1:1518987/1‑94 (MQ=255)
              cTATACCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGCCGCGTTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.cc                                                                                  <  2:1082546/101‑1 (MQ=255)
               tataTCGAGCAGCACCGCGACATTATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGGTCCG.tcc                                                                                 >  2:727772/1‑101 (MQ=255)
                atatCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..CGGGGGGCCG.cccc                                                                                >  1:1603767/1‑101 (MQ=255)
                atatCGAGCAGCACCGCGACATGATCTTCCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.cccc                                                                                <  2:2372365/101‑1 (MQ=255)
                agatCGAGCCGCACCGCGACAGGATCTTGCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCCCCGGGGGCGCCCCG.CC..GGGGGCTCCG.cccc                                                                                <  2:308624/99‑1 (MQ=37)
                  atCGAGCAGCACCGCGACATGATCTTTCCGCCGGGGACGGCC.TGAGATTCCGCCCGGGGCGCGCTTGCGCCTGGGGCGACCCG.CC..GGGGGCTCCG.CCCCCg                                                                              <  2:3913909/101‑1 (MQ=255)
                  agggAGCAGCCCCGCGACATGATCTTTCCGCGGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCg                                                                              <  2:1284313/98‑1 (MQ=255)
                   tggAGCAGCCCCGCGAAATGATCTTCCCGCCGGTGAGGGCC.TGAGATTTCGCCCGGGGCGCGCTGGCGCCCCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCgg                                                                             <  2:2584544/99‑1 (MQ=37)
                   tggAGCAGCACCGCGACATGATCTTCCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTGGGGCGACCCG.CC..GGGGGCTCCG.CCCCCgg                                                                             <  2:1960145/99‑1 (MQ=255)
                   ccGACCAGCACCGCGACAGGTTCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGTTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCgg                                                                             <  2:1299967/100‑1 (MQ=38)
                     gaccacccccGCGACTTGATCTTCCCGCGGGTGCCGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGAc                                                                           <  2:3165764/93‑1 (MQ=18)
                     gAGCAGCCCCGCGACATGATTTTTCCGCCGGGGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGAc                                                                           <  2:1240210/101‑1 (MQ=38)
                     gAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..CGGGGGGCCC.ccccccccc                                                                           >  1:1729709/1‑97 (MQ=255)
                         agcccggcgACATGATCTTCCCGCCGGTGCCGGCC.GGAGTTTTCGCCCGGGGCGCGTTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGAccccc                                                                       <  2:1530066/95‑1 (MQ=25)
                         agccCCGGGACATGATCTTCCCGCCGGTGCCGGCC.TGAGATTCCGCCGGGGGCGCGCTTGCGCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGAccccc                                                                       <  1:532741/101‑1 (MQ=21)
                         acccccGCTAAATGATTTTTCCGCCGGTGCGGGCC.TGAGTTTTCGCCCGGGGCGCGTTTGCGCCTGGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGAccccc                                                                       <  2:2540320/97‑1 (MQ=21)
                           ccccGCGACAGGTTCTTCCCGCCGGTGGCGGCC.TGGGATTTCGCCGGGGGCGCGCTGGCGCCGGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCgg                                                                     <  1:574524/99‑1 (MQ=21)
                            cccGCGACATGATCTTCCCGCGGGTGACGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCggg                                                                    <  1:1293307/100‑1 (MQ=25)
                            cccGCGACATGATCTTCCCGCCGGTGCCGGCC.TGAGTTTCCGCCCGGGGCGCGCTTGCCCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCggg                                                                    <  1:3342379/100‑1 (MQ=37)
                               cggcatggcccTTCCCGCCGGTGACGCCC.GGACATTCCGCCCGGGGCGCGCTGGCGCCGCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGata                                                                 <  1:4232588/91‑1 (MQ=18)
                                cgACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCC..GCGGGACCCC.CCCCCGGCccccccgccag                                                                 >  1:593753/1‑95 (MQ=255)
                                cgACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGGTCCGCCCCCCGGCCCCCCggggct                                                                 >  2:1831135/1‑98 (MQ=38)
                                 gACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CCCGGGGGGCGCGC.CCCCCCGCCCCCCggggcg                                                                 >  1:271402/1‑98 (MQ=255)
                                   ctggttCTTCCCGCGGGTG.CGGCCGTGAGATTGCCCCGGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTg                                                             <  1:2916727/96‑1 (MQ=12)
                                     tgttCTTCCCGCGGGTGCGGGCG.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCGGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTggg                                                           <  1:2934559/98‑1 (MQ=18)
                                        tctccccgcggGGGACGGCC.TGAGTTTCCGCCCGGGGCTCGCTTGCGCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCa                                                        <  1:579974/96‑1 (MQ=21)
                                        tctccccgccgGCGGCGCCT.GGAGTTTCCGCCGGGGGCGCCCTGGCGCCCGGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCa                                                        <  1:2105134/96‑1 (MQ=9)
                                          tttCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCCGGCCCCCGGGGTATTTGGGGGAAg                                                      >  2:1159268/1‑101 (MQ=37)
                                            tCCGCGGGGGAGGGCC.TGAATTTCCCCCCGGGGCCCGCTTCCGCCGCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGat                                                    <  2:3894313/101‑1 (MQ=17)
                                             ccggcgGTGACGGCC.GGGGTTTCCGCGCGGGGCGCGTTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatg                                                   <  2:1517523/101‑1 (MQ=18)
                                             ccgccgGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCC..GGGGGGCCCC.CCCCCCCCCCCCCGGGGGATTTtgggggagag                                                    >  1:2473119/1‑95 (MQ=255)
                                              cgccgTTGACGCCC.GGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatga                                                  <  2:2388024/101‑1 (MQ=21)
                                                  ggggccGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatg                                              <  1:2411677/96‑1 (MQ=21)
                                                  ggTGCCGCCG.TGAGATTGCGCCGGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatg                                              <  2:3829964/101‑1 (MQ=18)
                                                   gTGCCGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatga                                             <  1:183849/101‑1 (MQ=21)
                                                      gcGGCC.TGAGATTCCGCCGGGGGCGCGCTTGCGCCGCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                          <  1:3389211/100‑1 (MQ=21)
                                                      aCGGCC.TGAGTTCGCGCCGGGGGCGCCCCCGCCCGGGGCGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                          <  2:3550350/101‑1 (MQ=9)
                                                        ggCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CCG.GGGGGCCCCG.CCCCGGGCCCCCCGGG.GATTTGGGGCCAGatggaaaggattac                                        >  1:1235267/1‑93 (MQ=25)
                                                           ccggagtTTTCGCCGGGGGCGCGGTTGCCCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACtt                                      <  1:2383970/98‑1 (MQ=18)
                                                             tGAGTTTTCGCCGGGGGCGCGCTTGCGCCGCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTc                                    <  1:3031199/101‑1 (MQ=21)
                                                             tGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTc                                    <  1:916986/101‑1 (MQ=21)
                                                             tGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGGTCCG.CCCCCCGACCCCCCGGGGATTTTGGGGAAGATGAAAAGAAAGAATTTc                                    >  2:3480757/1‑101 (MQ=21)
                                                                    tCGCCGGGGGCGCGCTTGCGCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                             <  2:3922010/101‑1 (MQ=255)
                                                                    ccGCCCGGGGCGCGCTGGCCCCGCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                             <  2:770957/100‑1 (MQ=255)
                                                                     cGCGCGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgcg                            <  1:3481009/101‑1 (MQ=21)
                                                                          ggggGGCGCTGGCCCCCGGGGCCTCCCG.CC..GGGGGCTCCT.CCCCCGGACCCCCGGGATATTGGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGt                       <  2:462184/101‑1 (MQ=18)
                                                                            ggccccctcgcgcCCCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTAc                     <  2:1523525/92‑1 (MQ=21)
                                                                             gccctctgccgcCTCGGGCCCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACa                    <  2:1518883/92‑1 (MQ=21)
                                                                                  cTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTg               <  1:1000198/101‑1 (MQ=255)
                                                                                   tgccgcCGCGGGCCCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGt              <  2:258906/98‑1 (MQ=25)
                                                                                       cccgcGGCCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCa          <  1:2623875/97‑1 (MQ=255)
                                                                                          tggggCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCAccc       <  2:3949053/99‑1 (MQ=255)
                                                                                             ggCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTg    <  1:1159362/101‑1 (MQ=255)
                                                                                              gccccccG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGc   <  2:3150801/97‑1 (MQ=255)
                                                                                               cGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTgat  <  1:785972/101‑3 (MQ=255)
                                                                                                     |                                                                                                  
CCCTGGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCT  >  NC_014034/744553‑744747

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG