New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 744656 =66 (0.320)26 (0.130) 3/196 31.3 0.31 intergenic (+41/+171) idi2/bchO isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
?NC_014034 900805 = 51 (0.240)intergenic (‑134/‑153) ldh/ftsW L‑lactate dehydrogenase/cell division protein FtsW
Rejected: Position hash score below cutoff.

GGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGG  >  NC_014034/744557‑744756
                                                                                                       |                                                                                                     
gccTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTGCGGCGGGTGACGGCC.TGAGATTTCGCCGGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..gg                                                                                                      <  2:2639892/99‑1 (MQ=255)
  cTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..gggg                                                                                                    >  2:536255/1‑101 (MQ=255)
   tCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..ggggg                                                                                                   >  1:657363/1‑101 (MQ=255)
   tCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..ggggg                                                                                                   >  1:3922270/1‑101 (MQ=255)
     aaGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCGGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCt                                                                                                 <  1:3844779/101‑1 (MQ=255)
      ataTCTATATCGAGCAGCACCGCGACATTATCTTTCCGCCGGTGACGGCC.TGAGATTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTc                                                                                                <  2:3421369/99‑1 (MQ=255)
       gATCTATATCGAGCAGCACCGCGACATGATCTTCCCGCCGGTGACGGCC.TGAGATTTCGCCGGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTcc                                                                                               <  1:2085932/101‑1 (MQ=255)
          cTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTNCGCCTCGGGCGACCCG.CC..cgggggggcgcc                                                                                            >  1:1518987/1‑94 (MQ=255)
          cTATACCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGCCGCGTTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.cc                                                                                           <  2:1082546/101‑1 (MQ=255)
           tataTCGAGCAGCACCGCGACATTATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGGTCCG.tcc                                                                                          >  2:727772/1‑101 (MQ=255)
            atatCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..CGGGGGGCCG.cccc                                                                                         >  1:1603767/1‑101 (MQ=255)
            atatCGAGCAGCACCGCGACATGATCTTCCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.cccc                                                                                         <  2:2372365/101‑1 (MQ=255)
            agatCGAGCCGCACCGCGACAGGATCTTGCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCCCCGGGGGCGCCCCG.CC..GGGGGCTCCG.cccc                                                                                         <  2:308624/99‑1 (MQ=37)
              atCGAGCAGCACCGCGACATGATCTTTCCGCCGGGGACGGCC.TGAGATTCCGCCCGGGGCGCGCTTGCGCCTGGGGCGACCCG.CC..GGGGGCTCCG.CCCCCg                                                                                       <  2:3913909/101‑1 (MQ=255)
              agggAGCAGCCCCGCGACATGATCTTTCCGCGGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCg                                                                                       <  2:1284313/98‑1 (MQ=255)
               tggAGCAGCCCCGCGAAATGATCTTCCCGCCGGTGAGGGCC.TGAGATTTCGCCCGGGGCGCGCTGGCGCCCCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCgg                                                                                      <  2:2584544/99‑1 (MQ=37)
               tggAGCAGCACCGCGACATGATCTTCCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTGGGGCGACCCG.CC..GGGGGCTCCG.CCCCCgg                                                                                      <  2:1960145/99‑1 (MQ=255)
               ccGACCAGCACCGCGACAGGTTCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGTTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCgg                                                                                      <  2:1299967/100‑1 (MQ=38)
                 gaccacccccGCGACTTGATCTTCCCGCGGGTGCCGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGAc                                                                                    <  2:3165764/93‑1 (MQ=18)
                 gAGCAGCCCCGCGACATGATTTTTCCGCCGGGGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGAc                                                                                    <  2:1240210/101‑1 (MQ=38)
                 gAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..CGGGGGGCCC.ccccccccc                                                                                    >  1:1729709/1‑97 (MQ=255)
                     agcccggcgACATGATCTTCCCGCCGGTGCCGGCC.GGAGTTTTCGCCCGGGGCGCGTTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGAccccc                                                                                <  2:1530066/95‑1 (MQ=25)
                     agccCCGGGACATGATCTTCCCGCCGGTGCCGGCC.TGAGATTCCGCCGGGGGCGCGCTTGCGCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGAccccc                                                                                <  1:532741/101‑1 (MQ=21)
                     acccccGCTAAATGATTTTTCCGCCGGTGCGGGCC.TGAGTTTTCGCCCGGGGCGCGTTTGCGCCTGGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGAccccc                                                                                <  2:2540320/97‑1 (MQ=21)
                       ccccGCGACAGGTTCTTCCCGCCGGTGGCGGCC.TGGGATTTCGCCGGGGGCGCGCTGGCGCCGGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCgg                                                                              <  1:574524/99‑1 (MQ=21)
                        cccGCGACATGATCTTCCCGCGGGTGACGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCggg                                                                             <  1:1293307/100‑1 (MQ=25)
                        cccGCGACATGATCTTCCCGCCGGTGCCGGCC.TGAGTTTCCGCCCGGGGCGCGCTTGCCCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCggg                                                                             <  1:3342379/100‑1 (MQ=37)
                           cggcatggcccTTCCCGCCGGTGACGCCC.GGACATTCCGCCCGGGGCGCGCTGGCGCCGCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGata                                                                          <  1:4232588/91‑1 (MQ=18)
                            cgACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCC..GCGGGACCCC.CCCCCGGCccccccgccag                                                                          >  1:593753/1‑95 (MQ=255)
                            cgACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGGTCCGCCCCCCGGCCCCCCggggct                                                                          >  2:1831135/1‑98 (MQ=38)
                             gACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CCCGGGGGGCGCGC.CCCCCCGCCCCCCggggcg                                                                          >  1:271402/1‑98 (MQ=255)
                               ctggttCTTCCCGCGGGTG.CGGCCGTGAGATTGCCCCGGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTg                                                                      <  1:2916727/96‑1 (MQ=12)
                                 tgttCTTCCCGCGGGTGCGGGCG.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCGGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTggg                                                                    <  1:2934559/98‑1 (MQ=18)
                                    tctccccgcggGGGACGGCC.TGAGTTTCCGCCCGGGGCTCGCTTGCGCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCa                                                                 <  1:579974/96‑1 (MQ=21)
                                    tctccccgccgGCGGCGCCT.GGAGTTTCCGCCGGGGGCGCCCTGGCGCCCGGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCa                                                                 <  1:2105134/96‑1 (MQ=9)
                                      tttCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCCGGCCCCCGGGGTATTTGGGGGAAg                                                               >  2:1159268/1‑101 (MQ=37)
                                        tCCGCGGGGGAGGGCC.TGAATTTCCCCCCGGGGCCCGCTTCCGCCGCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGat                                                             <  2:3894313/101‑1 (MQ=17)
                                         ccggcgGTGACGGCC.GGGGTTTCCGCGCGGGGCGCGTTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatg                                                            <  2:1517523/101‑1 (MQ=18)
                                         ccgccgGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCGCCC..GGGGGGCCCC.CCCCCCCCCCCCCGGGGGATTTtgggggagag                                                             >  1:2473119/1‑95 (MQ=255)
                                          cgccgTTGACGCCC.GGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatga                                                           <  2:2388024/101‑1 (MQ=21)
                                              ggggccGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatg                                                       <  1:2411677/96‑1 (MQ=21)
                                              ggTGCCGCCG.TGAGATTGCGCCGGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatg                                                       <  2:3829964/101‑1 (MQ=18)
                                               gTGCCGGCC.TGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGatgaaatga                                                      <  1:183849/101‑1 (MQ=21)
                                                  gcGGCC.TGAGATTCCGCCGGGGGCGCGCTTGCGCCGCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                                   <  1:3389211/100‑1 (MQ=21)
                                                  aCGGCC.TGAGTTCGCGCCGGGGGCGCCCCCGCCCGGGGCGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAaatgaatg                                                   <  2:3550350/101‑1 (MQ=9)
                                                    ggCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CCG.GGGGGCCCCG.CCCCGGGCCCCCCGGG.GATTTGGGGCCAGatggaaaggattac                                                 >  1:1235267/1‑93 (MQ=25)
                                                       ccggagtTTTCGCCGGGGGCGCGGTTGCCCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACtt                                               <  1:2383970/98‑1 (MQ=18)
                                                         tGAGTTTTCGCCGGGGGCGCGCTTGCGCCGCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTc                                             <  1:3031199/101‑1 (MQ=21)
                                                         tGAGTTTCCGCCGGGGGCGCGCTTGCGCCTCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTc                                             <  1:916986/101‑1 (MQ=21)
                                                         tGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGGTCCG.CCCCCCGACCCCCCGGGGATTTTGGGGAAGATGAAAAGAAAGAATTTc                                             >  2:3480757/1‑101 (MQ=21)
                                                                tCGCCGGGGGCGCGCTTGCGCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                                      <  2:3922010/101‑1 (MQ=255)
                                                                ccGCCCGGGGCGCGCTGGCCCCGCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgc                                      <  2:770957/100‑1 (MQ=255)
                                                                 cGCGCGGGGCGCGCTTGCCCCTGGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTgcg                                     <  1:3481009/101‑1 (MQ=21)
                                                                      ggggGGCGCTGGCCCCCGGGGCCTCCCG.CC..GGGGGCTCCT.CCCCCGGACCCCCGGGATATTGGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGt                                <  2:462184/101‑1 (MQ=18)
                                                                        ggccccctcgcgcCCCGGGCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTAc                              <  2:1523525/92‑1 (MQ=21)
                                                                         gccctctgccgcCTCGGGCCCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACa                             <  2:1518883/92‑1 (MQ=21)
                                                                              cTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTg                        <  1:1000198/101‑1 (MQ=255)
                                                                               tgccgcCGCGGGCCCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGt                       <  2:258906/98‑1 (MQ=25)
                                                                                   cccgcGGCCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCa                   <  1:2623875/97‑1 (MQ=255)
                                                                                      tggggCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCAccc                <  2:3949053/99‑1 (MQ=255)
                                                                                         ggCGCCCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTg             <  1:1159362/101‑1 (MQ=255)
                                                                                          gccccccG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGc            <  2:3150801/97‑1 (MQ=255)
                                                                                           cGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTgat           <  1:785972/101‑3 (MQ=255)
                                                                                                    c..gGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg   <  2:1235171/101‑1 (MQ=255)
                                                                                                    c..gGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg   <  1:440705/101‑1 (MQ=255)
                                                                                                    c..gGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg   >  1:2150029/1‑101 (MQ=255)
                                                                                                    c..gGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTg   <  2:824596/101‑1 (MQ=255)
                                                                                                       gggggCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTgg  <  2:966107/101‑1 (MQ=255)
                                                                                                       |                                                                                                     
GGCTCAAGATCTATATCGAGCAGCACCGCGACATGATCTTTCCGCCGGTGACGGCC.TGAGATTTCGCCCGGGGCGCGCTTGCGCCTCGGGCGACCCG.CC..GGGGGCTCCG.CCCCCGGACCCCCGGGATATTTGGGGCAAGATGAAATGAATGACTTTCCGTCTGCGGCGGTACAGCCTGTCCCACCCCTGCTTTTCCTTGG  >  NC_014034/744557‑744756

Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 30 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG