New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1253895 =	51 (0.240)	20 (0.100)	4/198	30.4	0.35	intergenic (+53/+38)	RCAP_rcc01181/hisH	hypothetical protein/imidazole glycerol phosphate synthase subunit HisH
	?	NC_014034	1721522 =	23 (0.110)					intergenic (‑417/+29)	RCAP_rcc01588/RCAP_rcc01589	GSCFA family protein/ErfK/YbiS/YcfS/YnhG family protein
Rejected: Position hash score below cutoff.

AAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCC.GG.TCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGGCGACCCGCC....GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGAACAGTC  >  NC_014034/1721428‑1721621                                                                                                      |                                                                                                    aaaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCC.GG.TCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGGCGACCCGCC....cgggggggg                                                                                               >  2:2300277/1‑95 (MQ=255)  aaTAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCC.GG.TCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGGCGACCCGCC....ggggggtgcg                                                                                              >  2:4109217/1‑94 (MQ=255)               gggCCTCCCTCCCGCAGCGCTTTATTTTTGGCC.GG.TCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGGCGACCCGCCCG..GGGCCGGGCCCCCCGGccccc                                                                                   >  2:2699279/1‑101 (MQ=25)                 gCCTCCCTCCCGCAGCGCTTTATTTTTGGCC.GG.TCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGGCGACCCGCCGG..GGGGTGGGCCCCCCGGccccccc                                                                                 >  2:2024375/1‑101 (MQ=25)                     cccccccGCGTCGTTTTTTTTTTGGCG.GG.CCCCCTGGGGTTTTC.CGCCCCGGCCCCCCCGGGGCCCCCCGCCGG..GGGCTGCGCCCCCGGACCCCCCCCGaa                                                                             <  1:1998221/101‑1 (MQ=2)                       ctcccGCAGCGCTTTATTTTTGGCC.GG.TCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGGCGACCCGCCGG..GGGCTGGGCCCCCGGACCCCCCCCGCAGa                                                                           >  2:537195/1‑101 (MQ=21)                       ctcccGCAGCGCTTTATTTTTGGCC.GG.TCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGGCGACCCGCCGG..GGGCGGCGCCCCCGGGccccccccccaga                                                                           >  2:2471561/1‑96 (MQ=21)                        ccccGCGGCTTTTTTTTTTGGGCC.GG..CCCCTTGGGGGTTTCCCCCGCGGCCGCGCCGGGGCCCCCCGCCGG..GGGCTGCGCCCCCGGACCCCCCCCGAAGAt                                                                          <  1:2472855/100‑1 (MQ=9)                           cGCAGCGCTTTATTTTTGGCC.GG.TCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGGCGACCCGCCCGGGGGGGGGCGCCCCCGGCccccccccccccatc                                                                         >  1:1393939/1‑94 (MQ=21)                               ggtttttTTTTTGGGCC.GG.CCTCCGGGGGGTTTC.CCCCTGGGCCGCGCAGGGGCGCCCCGCCGG..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGAt                                                                   <  1:1288228/97‑1 (MQ=255)                               cgtttttTTTTTTGGGC.GGTTCGCTTTGGGGTTTC.CCCCGCGGCGCCCCCGGGGCCCCCCGCCGG..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGa                                                                    <  1:3416447/97‑1 (MQ=9)                                  cTTTATTTTTGGCC.GG.TCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGGCGACCCGCCGG..GGGCTGCGCCCCCCGACCCCCCCCGAAGATCTCAGATCAc                                                                >  2:2065036/1‑101 (MQ=25)                                     tttttttGGCCGGG.TGGGTTTGGGGTTTT.CGCCGCGGCCGCGCCGGGCCCCCCCGCCGG..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCt                                                              <  2:3891594/99‑1 (MQ=12)                                        ttgtGGCC.GC.TCGCGTTGGCGTTTC.CGCCGGGGCGGCGCGGAGGCCCCCCGCCGG..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGAc                                                          <  2:255739/98‑1 (MQ=255)                                            ggCG.GG.TCGCCTGGGGGTTCC.CGCCCGGGCGGCCCCGGGCCGCCCCGCCGG..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGc                                                      <  1:2699485/101‑1 (MQ=255)                                                            gggttttccGCCGCGGCCGCGCGGAGGCCCCCCGCCGG..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGc                                         <  1:4217529/93‑1 (MQ=21)                                                                   ccGCCGCGGCGGCCCCGAGGCCCCCCGCCGG..GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCgg                                  <  2:3426966/100‑1 (MQ=255)                                                                           gCTGCGCCGAGGCGACCCGCCGG..GGGCTGGGCCCCCGGACCCCCCCCCCAGAACTCAGATAACCCTGGCCTCCGTGCCGCCCGGGCAGAGCGGACAAAggt                          >  1:1908908/1‑99 (MQ=12)                                                                                          cgcccgccgggggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGc             <  1:2706171/91‑1 (MQ=255)                                                                                             ccgccgggggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCAtt          <  1:3329004/94‑1 (MQ=255)                                                                                               gccgggggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGa        <  2:694109/96‑1 (MQ=255)                                                                                               cccgggagCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGa        <  1:689600/94‑1 (MQ=255)                                                                                                ccgggggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGaa       <  2:1942844/97‑1 (MQ=255)                                                                                                   ggggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGAACAg    >  1:2662510/2‑101 (MQ=255)                                                                                                   ggggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCCGCGTGGCGCCCGGGCCGAGCGGATAAAGGTCCTCGACCTGGGCGTTGAACAg    >  2:2990827/2‑101 (MQ=255)                                                                                                    gggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGAACAGt   >  2:2316191/1‑101 (MQ=255)                                                                                                     ggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGAACAGTc  >  2:3604181/1‑101 (MQ=255)                                                                                                     ggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGAACAGTc  >  1:312089/1‑101 (MQ=255)                                                                                                     ggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGAACAGTc  >  1:2704233/1‑101 (MQ=255)                                                                                                     ggCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGAACAGTc  >  1:2047778/1‑101 (MQ=255)                                                                                                      |                                                                                                    AAATAACGCGCTGCGGGCCTCCCTCCCGCAGCGCTTTATTTTTGGCC.GG.TCGCCTTGGGGATTT.CGCCTCGGCTGCGCCGAGGCGACCCGCC....GGGCTGCGCCCCCGGACCCCCCCCGAAGATCTCAGATCACCTTGACCTGCGTGCCGACCGGGCAGAGCGGATAAAGTTCCTCGACCTGGGCATTGAACAGTC  >  NC_014034/1721428‑1721621 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG