New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1396639 =140 (0.990)56 (0.390) 8/134 20.6 0.36 coding (521/1578 nt) RCAP_rcc01307 hypothetical protein
?NC_014034 = 1434448 63 (0.300)intergenic (‑227/‑731) RCAP_rcc01334/RCAP_rcc01335 hypothetical protein/Fis family GAF modulated sigma54 specific transcriptional regulator
Rejected: Position hash score below cutoff.

Only 100 of 148 total aligned reads displayed.

GGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA  >  NC_014034/1434348‑1434510
                                                                                                      |                                                              
gggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAacac                                                                <  2:49243/101‑1 (MQ=255)
 ggTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACg                                                               >  1:3737963/1‑101 (MQ=255)
   tCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAAAACGGa                                                             >  1:3661185/1‑101 (MQ=255)
    cGCCCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAt                                                            <  2:2103154/101‑1 (MQ=255)
     gCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGAtt                                                           <  2:2990482/101‑1 (MQ=255)
      cTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTg                                                          >  1:2619558/1‑101 (MQ=255)
      cTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTg                                                          >  1:2442518/1‑101 (MQ=255)
      cTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTg                                                          <  1:2355492/101‑1 (MQ=255)
       tCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCCCGGCTGCGTCAACCTT..GCCCCTCCCCCCGCGGGGGCCCGGATCGCAACCCGGGtttc                                                         >  1:2440001/1‑99 (MQ=25)
       tCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGc                                                         >  1:2850070/1‑101 (MQ=255)
       cccccccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGc                                                         <  2:2679892/100‑1 (MQ=255)
          ccccGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGC.ACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCggcaaggac                                                       >  1:1758618/1‑94 (MQ=37)
          ccccGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGC.ACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCggcaaggac                                                       <  1:3692200/101‑8 (MQ=37)
          ccccGCGGGGGCGTGGATCGAAACTTGTCTGACGCGCTCATCAGC.ACGTCAAGATTCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACTCggcaaggac                                                       <  2:386047/101‑8 (MQ=37)
          ccccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATg                                                      <  1:2369359/101‑1 (MQ=255)
           cccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATgg                                                     >  2:2277890/1‑101 (MQ=255)
           cccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATgg                                                     <  1:3793530/101‑1 (MQ=255)
           cccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATgg                                                     <  1:4223063/101‑1 (MQ=255)
           cccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATgg                                                     <  1:641641/101‑1 (MQ=255)
            ccGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGgc                                                    >  2:639453/1‑101 (MQ=255)
             cgcgGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGgcg                                                   <  2:3983981/101‑1 (MQ=255)
              gcgGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGgcgc                                                  >  2:333193/1‑101 (MQ=255)
               cgGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGcc                                                 <  1:2156382/101‑1 (MQ=255)
                gggggCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACTGATTGCATGGCGCCg                                                <  2:3704748/101‑1 (MQ=255)
                gggggCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCg                                                >  1:1937812/1‑101 (MQ=255)
                  gggCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAg                                              >  2:3634195/1‑101 (MQ=255)
                   ggCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAgg                                             <  2:2451897/101‑1 (MQ=255)
                   ggCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAgg                                             >  1:2098742/1‑101 (MQ=255)
                    gCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAggg                                            <  2:2012616/101‑1 (MQ=255)
                     cGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGa                                           <  1:291094/101‑1 (MQ=255)
                     cGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGANTGCATGGCGCCGAGGGa                                           >  2:975704/1‑101 (MQ=255)
                     cGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GGCGCTCCCCCCGCGGGGGGGTGGATCGAAACACGGATGGCATGGCGCNGANGGa                                           >  1:710392/1‑101 (MQ=255)
                      gTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGAc                                          >  1:3891015/1‑101 (MQ=255)
                        ggATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAg                                        <  1:3187439/101‑1 (MQ=255)
                        ggATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAg                                        <  1:644178/101‑1 (MQ=255)
                         gATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAgg                                       >  2:3555086/1‑101 (MQ=255)
                         gATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAgg                                       <  2:2032111/101‑1 (MQ=255)
                         gATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAgg                                       >  1:533225/1‑101 (MQ=255)
                           tCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCt                                     <  2:648936/101‑1 (MQ=255)
                            cGAGACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCtt                                    <  1:3553905/101‑1 (MQ=255)
                             gAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt                                   <  1:1081316/101‑1 (MQ=255)
                             gAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt                                   <  2:3083926/101‑1 (MQ=255)
                             gAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt                                   >  1:254849/1‑101 (MQ=255)
                             gAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt                                   <  2:2116587/101‑1 (MQ=255)
                             gAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCttt                                   <  2:1551704/101‑1 (MQ=255)
                              aaaCGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTg                                  <  1:2916904/101‑1 (MQ=255)
                               aaCGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGc                                 <  1:2782214/101‑1 (MQ=255)
                               aaCGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGc                                 >  2:1476012/1‑101 (MQ=255)
                                aCGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCa                                <  1:4234840/101‑1 (MQ=255)
                                aCGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCa                                <  1:3008264/101‑1 (MQ=255)
                                aCGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCACGGGACAGGCTTTGCa                                >  2:517457/1‑101 (MQ=255)
                                 cGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAg                               <  2:3570259/101‑1 (MQ=255)
                                  gTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGt                              >  1:3063356/1‑101 (MQ=255)
                                  gTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGt                              >  1:927974/1‑101 (MQ=255)
                                   tctcCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGGGCCGAGGGACAGGCTTTGCAGTc                             >  1:470080/1‑101 (MQ=255)
                                   tctcCGCTCTGCTGCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTc                             <  2:1720205/101‑1 (MQ=255)
                                    ctcCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg                            >  1:339138/1‑101 (MQ=255)
                                    ctcCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg                            >  2:3106830/1‑101 (MQ=255)
                                    ctcCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCg                            <  1:2429280/101‑1 (MQ=255)
                                      ccGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCt                          >  1:470404/1‑101 (MQ=255)
                                        gCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcc                        >  1:1279995/1‑101 (MQ=255)
                                        gCTCTGCTTCACGCCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcc                        <  1:3634448/101‑1 (MQ=255)
                                         ctctGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccc                       >  2:1854485/1‑101 (MQ=255)
                                          tctGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccc                      <  1:891033/101‑1 (MQ=255)
                                          tctGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccc                      <  2:3865244/101‑1 (MQ=255)
                                           ctGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccccc                     >  1:1154336/1‑101 (MQ=255)
                                           ctGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTccccc                     >  1:3915951/1‑101 (MQ=255)
                                            tGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccccc                    <  1:3011953/101‑1 (MQ=255)
                                            tGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccccc                    <  1:944676/101‑1 (MQ=255)
                                            tGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTcccccc                    <  1:169340/101‑1 (MQ=255)
                                             gCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcg                   <  1:2738112/101‑1 (MQ=255)
                                              cTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGTTTTGCAGTCGCTCCCCCcgc                  >  1:588740/1‑101 (MQ=255)
                                              cTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcgc                  <  2:3975867/101‑1 (MQ=255)
                                               ttCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcgcg                 <  2:1065881/101‑1 (MQ=255)
                                               ttCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCcgcg                 >  1:2266420/1‑101 (MQ=255)
                                                tCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCgg                <  2:3737709/101‑1 (MQ=255)
                                                  ccGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCgggg              <  2:1197310/100‑1 (MQ=255)
                                                  aCGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCgggg              <  2:2396352/101‑1 (MQ=255)
                                                    ggCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGc            <  1:1340769/101‑1 (MQ=40)
                                                    ggCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGc            >  1:2099178/1‑101 (MQ=40)
                                                    ggCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGc            <  2:901761/101‑1 (MQ=40)
                                                     gCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCg           >  2:1323642/1‑101 (MQ=40)
                                                      cTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGt          >  1:2650667/1‑101 (MQ=39)
                                                       tGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCTTg         <  1:2414160/101‑1 (MQ=38)
                                                        gCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTgg        >  2:4102408/1‑101 (MQ=37)
                                                        gCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTgg        <  1:333244/101‑1 (MQ=37)
                                                        gCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTgg        <  2:3821093/101‑1 (MQ=37)
                                                         cGTCAACCTT..GTCTCTCCCCCCGCGGAGGCGTGCATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGa       <  2:3878633/101‑1 (MQ=255)
                                                          gTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGAt      >  2:3481231/1‑101 (MQ=34)
                                                          gTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGAt      <  2:569336/101‑1 (MQ=34)
                                                           tCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATc     >  2:3520258/1‑101 (MQ=33)
                                                           tCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATc     <  1:830383/101‑1 (MQ=33)
                                                            cAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGGTCg    >  2:3904619/1‑101 (MQ=17)
                                                             aaCCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGa   <  1:814558/101‑1 (MQ=31)
                                                             aaCCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGa   >  2:1939007/1‑101 (MQ=31)
                                                             aaCCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGa   >  2:175288/1‑101 (MQ=31)
                                                              aCCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGaa  <  1:1430748/101‑1 (MQ=11)
                                                              aCCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGaa  <  1:1172537/101‑1 (MQ=11)
                                                              aCCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGaa  <  2:2442334/101‑1 (MQ=11)
                                                              aCCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGaa  >  1:2693241/1‑101 (MQ=11)
                                                                                                      |                                                              
GGGTCGCTCCCCCCGCGGGGGCGTGGATCGAAACGTCTCCGCTCTGCTTCACGGCTGCGTCAACCTT..GTCGCTCCCCCCGCGGGGGCGTGGATCGAAACACGGATTGCATGGCGCCGAGGGACAGGCTTTGCAGTCGCTCCCCCCGCGGGGGCGTGGATCGAA  >  NC_014034/1434348‑1434510

Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 40 ≤  ATCG