BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1608051 =	0 (0.000)	53 (0.270)	24/184	16.6	0.40	intergenic (+321/‑26)	RCAP_rcc01484/murD	hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
*	?	NC_014034	= 1820392	161 (0.760)	53 (0.270)	24/184	16.6	0.40	intergenic (+83/‑103)	RCAP_rcc01683/RCAP_rcc01684	terminase‑like family protein/HK97 family phage portal protein
Rejected: Position hash score below cutoff.

Only 100 of 178 total aligned reads displayed.


CAGGTGCGCGGGCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGCGACGAGGAGAACG  >  NC_014034/1820292‑1820492


cAGGTGCGCGGGCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.Gaa                                                                                                          >  2:2636532/1‑101 (MQ=255)


cAGGTGCGCGGGCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.Gaa                                                                                                          <  2:1715700/101‑1 (MQ=255)


cAGGTGCGCGGGCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.Gaa                                                                                                          >  1:368680/1‑101 (MQ=255)


 aGGTGCGCGGGCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.Gaaa                                                                                                         >  1:877248/1‑101 (MQ=255)


 aGGTGCGCGGGCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.Gaaa                                                                                                         >  1:2348253/1‑101 (MQ=255)


 aGGTGCGCGGGCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.Gaaa                                                                                                         >  1:1901149/1‑101 (MQ=255)


  ggTGCGCGGGCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..c                                                                                                      <  2:2925281/101‑1 (MQ=255)


     gcgcGGGCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..cccc                                                                                                   <  2:687525/101‑1 (MQ=255)


      cgcgGGCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..ccccc                                                                                                  <  1:2630473/101‑1 (MQ=255)


       gcgGGCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..g                                                                                               <  1:1220373/101‑1 (MQ=255)


         gggCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCt                                                                                             >  1:1383355/1‑101 (MQ=255)


             tttGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTg                                                                                         >  2:1478767/1‑101 (MQ=255)


               tGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGcc                                                                                       >  1:302584/1‑101 (MQ=255)


               tGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGcc                                                                                       >  2:1324856/1‑101 (MQ=255)


               tGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGcc                                                                                       >  1:3630248/1‑101 (MQ=255)


                      gcAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGaaa                                                                                >  1:1518258/1‑101 (MQ=255)


                      gcAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGaaa                                                                                >  1:127867/1‑101 (MQ=255)


                      gcAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGaaa                                                                                >  1:2858774/1‑101 (MQ=255)


                       aaaGGGCGTATTTGGACCAGAAAAAAGCTGGTTTTTTTTTCT.G.GTTA.AAAATACGCCGGGGGGGTGCGGGGGTGT.GAAC..CCCCC..GCTTCTGCCGCGGAAAt                                                                               <  2:302539/100‑1 (MQ=21)


                        aaGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATc                                                                              >  2:1804304/1‑101 (MQ=255)


                         aGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCt                                                                             >  2:520506/1‑101 (MQ=255)


                         aGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCt                                                                             >  2:2778053/1‑101 (MQ=255)


                         aGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCt                                                                             >  2:3635187/1‑101 (MQ=255)


                             tgTATTTGGACCAGGAAATAGTTGCGTGTTTTTTCT.T.GGTG.AAAATACCCCACGGGGGTGCGGGGATGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTc                                                                         <  2:1929211/100‑1 (MQ=37)


                             gtgtgttGGAACAAGAAAAAGGT.TGTGTTTTTTTTGT.GGT..AAAAAACCCCCGGGGGGGGTGGGGGGGT.GAAACCCCCCC..GCTTCTGCCGCGGAAATCTGGt                                                                          <  2:39972/96‑1 (MQ=255)


                              gTATTTGGACAAGAAAAAGGCTGGTTGTTTTTTCT.T.GGTG.AAAATCCGCCAGGGGGGGGGGGGGGTGT.AAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCg                                                                        <  2:1126590/101‑1 (MQ=25)


                               tATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGa                                                                       >  1:2776987/1‑101 (MQ=255)


                               tATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGa                                                                       >  1:990464/1‑101 (MQ=255)


                                ttttGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGGGGGGGTGT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGaa                                                                      <  1:2040081/100‑1 (MQ=255)


                                aTTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGaa                                                                      >  1:3336254/1‑101 (MQ=255)


                                   tGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATATGGTCGAAAgg                                                                   >  2:1302158/1‑101 (MQ=255)


                                    ggagagagAAAAAGGTG.GTTTTTTTTTT.T.GGGGAAAAAGGCGCGGGGGGGGGGGGGGGGTGG.AAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAggg                                                                  <  1:1757427/94‑1 (MQ=255)


                                    agACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGG.GG.GAAA..ACCCC..GGCTCTTCCCCCGGAATCTGGGCGGAAgggg                                                                 >  2:846070/2‑100 (MQ=21)


                                     gACGAGAAAAAAGTTGCGTGTTTTTTCT.G.GGGG.AAAATACGCCGGGGGGGGGGGGGGGTGT.AAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGt                                                                 <  2:203313/101‑1 (MQ=25)


                                     gACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGt                                                                 >  1:3910866/1‑101 (MQ=255)


                                        cAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCgg                                                              >  1:3022720/1‑101 (MQ=255)


                                         agaaaaagGTTGTGTGTTTTTTTT.G.GGAA.AAAACCCGCCGGGGGGGGGGGGGGGTGA.AAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCggg                                                             <  2:4119883/98‑1 (MQ=255)


                                         aGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCggg                                                             >  2:2409593/1‑101 (MQ=255)


                                           gAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGt                                                           >  1:2226376/1‑101 (MQ=255)


                                            aaaaaGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGtt                                                          >  1:2953893/1‑101 (MQ=255)


                                             aaagGCTGTGTTTTTTTTTT.T.GGTA.AAAATCCGCCAGGGGGGTGGGGGGGTGT.AAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGttt                                                         <  1:2636724/101‑1 (MQ=255)


                                             aaagGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGttt                                                         <  2:1347390/101‑1 (MQ=255)


                                             aaaaGCTGGGTGTTTTTCCT.T.GGTA.AAAATACGCCAGGGGGGTGCGGGGGTGT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGttt                                                         <  2:1243714/101‑1 (MQ=37)


                                             aaaaGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGttt                                                         >  1:3735707/1‑101 (MQ=255)


                                               aaGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTc                                                       >  1:563274/1‑101 (MQ=255)


                                               aaGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTc                                                       <  2:1037926/101‑1 (MQ=255)


                                                 gCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTccc                                                     <  2:1383255/101‑1 (MQ=255)


                                                 actggggtttttttCT.TGGGGG.AAAATCCGCCGGGGGGGGGGGGGGGTGG.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTcc                                                      <  2:3996397/93‑1 (MQ=255)


                                                  ctggtttttttttCT.G.GGTA.AAAATACGCGAGGGGGGGGGGGGGGTGT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCg                                                    <  2:119699/94‑1 (MQ=255)


                                                  cggggtgtTTTTTCT.G.CGCG.AAAATGCGCCAGGGGGGTGGGGGGGTGT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCg                                                    <  1:700666/97‑1 (MQ=255)


                                                  cTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGttttagat                                                    >  2:2614883/1‑97 (MQ=255)


                                                    gctttttttttTG.T.GGAA.AAAAGCCGCCGGGGGGGTGGGGGGGTGT.AAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGc                                                  <  2:3171133/96‑1 (MQ=255)


                                                     cGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGcc                                                 >  2:3198691/1‑101 (MQ=255)


                                                      gtgtTTTTTGT.T.GGTG.AAAATCCGCAACGGGGGGGGGGGGGTGT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGccc                                                <  2:3437212/101‑1 (MQ=255)


                                                       ggtTTTTTCT.G.GGGA.AAAATCGGCCCGGGGGGGGGGGGGGAGA.CACC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCt                                               <  1:1134190/100‑1 (MQ=255)


                                                        gtTTTTTCT.T.GGTG.AAAATGCGCCACGGGGGCGCGGGGGTGT.GAAG..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCtt                                              <  2:636216/101‑1 (MQ=255)


                                                        gtTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCtt                                              >  1:1698982/1‑101 (MQ=255)


                                                         ttttttCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCttt                                             >  1:2804695/1‑101 (MQ=255)


                                                         ttttttCT.T.GGTA.AAAATACGCCAGGGGGGTGGGGGGGTGT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCttt                                             <  2:397212/101‑1 (MQ=255)


                                                          tttttCT.G.GGTG.AAAATACGCCACGGGGGGGCGGGGGTGT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCtttt                                            <  2:1901029/101‑1 (MQ=255)


                                                          tttttCT.G.GGTA.AAAATCCGCCAGGGGGGTGGGGGGTGGT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCtttt                                            <  2:4234329/101‑1 (MQ=255)


                                                              tgt.t.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCtt                                        >  1:2810268/3‑101 (MQ=255)


                                                               cT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCttt                                       >  1:200803/1‑101 (MQ=255)


                                                               cT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCttt                                       >  2:2298454/1‑101 (MQ=255)


                                                               cT.T.GGTG.AAAAGCCGCCAGGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCttt                                       <  2:2847342/101‑1 (MQ=255)


                                                                t.t.GGTG.AAAATACGCCACGGGGGGGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGACAGGGCCGGGGTTTTCCCGGCCCTTATTCTTTg                                      >  1:729990/1‑101 (MQ=38)


                                                                  t.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTgg                                     >  2:3093049/1‑101 (MQ=255)


                                                                    gttG.AAAAAACGCCGCGGGGGGGGGGGGGGGTGGAAACCCCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCttt                                       <  2:3336009/99‑1 (MQ=255)


                                                                    gtgg.AAAATACGCCAGGGGGGTGGGGGGGTGT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGc                                    <  2:2693061/98‑1 (MQ=255)


                                                                    ggTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGc                                    >  1:1010455/1‑101 (MQ=255)


                                                                    ggTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGc                                    >  1:3190978/1‑101 (MQ=255)


                                                                     gTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGcc                                   >  1:1671271/1‑101 (MQ=255)


                                                                         aaaaTACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCggg                                >  2:2957874/1‑101 (MQ=255)


                                                                           aaaacggcgcgggggggggggggtgT.GGAA..CCCCCCGGCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCggg                                <  2:1621995/92‑1 (MQ=255)


                                                                           aaTACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGc                              >  1:4159626/1‑101 (MQ=255)


                                                                            aTACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGcc                             >  1:1847047/1‑101 (MQ=255)


                                                                               gggggggggggggggggggtcC.CAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTg                          <  2:53926/95‑1 (MQ=255)


                                                                               cGCCGCGGGGGGGGGGGGGGTT.GAAAC.CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCtt                           <  1:3131032/101‑1 (MQ=255)


                                                                                  cACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTgggc                       >  2:4046703/1‑101 (MQ=255)


                                                                                   gggggggggggggggggT.GAACCCCCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTggg                        <  1:2731375/99‑1 (MQ=255)


                                                                                    cgggggtgcgggggtgT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTgggccg                     <  1:1324956/101‑1 (MQ=255)


                                                                                     gggggtgcgggggtgT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTgggccgg                    >  1:532269/1‑101 (MQ=255)


                                                                                      ggggtgcgggggtgT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTgggccggg                   >  2:1827779/1‑101 (MQ=255)


                                                                                       gggtgcgggggtgT.GAAA..CTCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTgggccgggc                  >  1:3516128/1‑101 (MQ=255)


                                                                                        ggtgcgggggtgC.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTgggccgggcc                 <  1:448919/101‑1 (MQ=255)


                                                                                           gggggggtgT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCcgcg              <  1:846151/99‑1 (MQ=255)


                                                                                            cgggggtgT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCcgcgc             >  1:3271842/1‑100 (MQ=255)


                                                                                            cgggggtgT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGcga             >  1:670438/1‑101 (MQ=255)


                                                                                            cgggggtgT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGcga             >  2:2909404/1‑101 (MQ=255)


                                                                                            cgggggtgT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGcga             >  1:31005/1‑101 (MQ=255)


                                                                                             gggggtgT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGcgac            >  1:3016237/1‑101 (MQ=255)


                                                                                             gggggtgT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGcgac            >  1:586687/1‑101 (MQ=255)


                                                                                              ggggtgT.GAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGcgacg           <  1:3916493/101‑1 (MQ=255)


                                                                                               gggtgT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGcgacga          >  2:319314/1‑101 (MQ=255)


                                                                                                gttgt.aAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGCGACgag         <  1:1077685/99‑1 (MQ=255)


                                                                                                ggtgT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGCGACgag         >  2:3509376/1‑101 (MQ=255)


                                                                                                ggtgT.AAAC..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGCGACcag         <  1:2417592/101‑1 (MQ=255)


                                                                                                 gtgt.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGCGACgagg        <  2:1276012/101‑1 (MQ=255)


                                                                                                  tgt.gAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGCGACgagga       >  1:3294553/1‑101 (MQ=255)


                                                                                                   gt.gAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGCGACgaggag      >  1:3223058/1‑101 (MQ=255)


CAGGTGCGCGGGCTTTGAGCGCGCAAGGGCGTATTTGGACCAGGAAAAAGCTGCGTGTTTTTTCT.T.GGTG.AAAATACGCCACGGGGGTGCGGGGGTGT.GAAA..CCCCC..GCTTCTGCCGCGGAAATCTGGTCGAAAGGGTCGGGGTTTTCCCGGCCCTTTTTCTTTGGCCGGGGCCTTGGGCCGGGCCGCGACGAGGAGAACG  >  NC_014034/1820292‑1820492

Base quality scores:


ATCG

< 3 ≤


ATCG

< 15 ≤


ATCG

< 27 ≤


ATCG

< 34 ≤


ATCG

< 41 ≤


ATCG