New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1608051 =14 (0.070)22 (0.110) 2/186 31.7 0.16 intergenic (+321/‑26) RCAP_rcc01484/murD hypothetical protein/UDP‑N‑acetylmuramoylalanine‑‑D‑glutamate ligase
?NC_014034 3504133 = 214 (1.010)intergenic (‑26/+57) recO/RCAP_rcc03309 DNA repair protein RecO/hypothetical protein
Rejected: Position hash score below cutoff.

Only 100 of 223 total aligned reads displayed.

AACACCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGTG  >  NC_014034/3504034‑3504231
                                                                                                        |                                                                                                    
aaCACCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGgtt                                                                                                     >  1:1926161/1‑101 (MQ=255)
aaCACCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGgtt                                                                                                     >  2:1018641/1‑101 (MQ=255)
     cTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.GC...GGGGGGTTTGCA.c                                                                                               >  1:1226204/1‑101 (MQ=255)
      tCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.cc                                                                                              <  1:638733/101‑1 (MQ=255)
         aCAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.ccccc                                                                                           <  1:3037053/101‑1 (MQ=255)
         aCAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTGCA.ccccc                                                                                           >  2:2792388/1‑101 (MQ=255)
          cAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCg                                                                                          <  2:580349/101‑1 (MQ=255)
           aaTCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCCC...GGGGGTTTTG.A.CCCCCgg                                                                                         >  1:241072/1‑101 (MQ=255)
            aTCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.GC...GGGGGGTTTGGA.CCCCCcgg                                                                                        >  2:3686260/1‑101 (MQ=255)
            aTCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCggg                                                                                        <  1:1421938/101‑1 (MQ=255)
             tCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGc                                                                                       <  1:293122/101‑1 (MQ=255)
              cGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTGCA.CCCCCggggc                                                                                      >  1:4201822/1‑99 (MQ=255)
                  gAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGGTTGGC.ACCCCGGGcccccc                                                                                  >  2:4024522/1‑100 (MQ=255)
                    gCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCa                                                                                <  2:3875593/101‑1 (MQ=255)
                    gCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCa                                                                                <  2:825745/101‑1 (MQ=255)
                      tttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAAGGG.CCGG.GGGGGTTTTGC..CCCCCGGCcccccccg                                                                                >  1:2168037/1‑98 (MQ=255)
                      tttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CCCGGGGGGGTTTTCCC.CCCCCGCCCCCCCgg                                                                                 >  1:2147812/1‑100 (MQ=255)
                      tttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAgg                                                                              <  1:574435/101‑1 (MQ=255)
                      tttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAgg                                                                              <  1:2792607/101‑1 (MQ=255)
                      tttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTGCA.CCCCCCGGCCCCCGCAgg                                                                              >  2:624975/1‑101 (MQ=255)
                       ttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCCC...GGGGGTTTTCCC.CCCCCGGCccccccgggg                                                                              >  2:3487389/1‑96 (MQ=255)
                       ttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGa                                                                             <  1:436550/101‑1 (MQ=255)
                       ttCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGa                                                                             <  2:50637/101‑1 (MQ=255)
                        tCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGat                                                                            <  1:2849811/101‑1 (MQ=255)
                          gCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGatat                                                                          <  1:1018732/101‑1 (MQ=255)
                          gCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTGCA.CCCCCCGGCCCCCGCCGGatat                                                                          >  2:4094864/1‑101 (MQ=255)
                           ccGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATAtt                                                                         <  1:4074324/101‑1 (MQ=255)
                           ccGTGAGGGGGGGTCAAAGGGATGGTGCCCCGGCTTGGCCAGCCCAGGGGGCCCGTGCCAAG.GG.CG...GGGGGTTTTGC..CCCCCGGGCCCCCGCAGGATAttt                                                                        <  2:3216263/101‑1 (MQ=255)
                            cGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAAGGG.CC...GGGGGGTTTGAC.CCCCCGGGcccccccggggactt                                                                         >  2:2327550/1‑91 (MQ=255)
                            cGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATAttt                                                                        <  1:1897336/101‑1 (MQ=255)
                             gTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTg                                                                       <  1:2024718/101‑1 (MQ=255)
                             gTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTGCA.CCCCCGGGCCCCCCCAGGGTATTTg                                                                       >  2:1335602/1‑101 (MQ=255)
                              tGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGa                                                                      <  1:2742954/101‑1 (MQ=255)
                                 aGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGc                                                                   <  1:1115202/101‑1 (MQ=255)
                                 aGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTTGA.CCCCCAGGCCCCCGCCGGGTTttttatgc                                                                   >  2:1115108/1‑96 (MQ=255)
                                 aGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTGCA.CCCCCCGGCCCCCGCAGGATATTTGAGGc                                                                   >  2:1163422/1‑101 (MQ=255)
                                  ggCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCa                                                                  <  1:3244149/101‑1 (MQ=255)
                                    cGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAg                                                                >  2:359227/1‑101 (MQ=255)
                                     gggTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGa                                                               <  1:3081041/101‑1 (MQ=255)
                                     gggTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGa                                                               <  2:2205181/101‑1 (MQ=255)
                                      ggTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAt                                                              >  2:1739379/1‑101 (MQ=255)
                                       gTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCCGGATATTTGAGGCAAGAT.a                                                            >  2:445532/1‑101 (MQ=255)
                                       gTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.a                                                            <  1:1140387/101‑1 (MQ=255)
                                        tCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.aa                                                           <  1:1335702/101‑1 (MQ=255)
                                        tCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.aa                                                           <  2:2742298/101‑1 (MQ=255)
                                        tCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CA...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.aa                                                           <  1:170302/101‑1 (MQ=255)
                                          gAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GGCCC...GCGGGTTTTGCC.CCCCCCGG.CCCCGCACGATAATTGATGCAAGAA.aaaa                                                         >  2:3262510/1‑101 (MQ=255)
                                          gAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.aaaa                                                         <  1:3923561/101‑1 (MQ=255)
                                          gAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.aaaa                                                         <  2:2829588/101‑1 (MQ=255)
                                          gAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.aaaa                                                         <  1:4036696/101‑1 (MQ=255)
                                            aaGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGc                                                       <  1:3518243/101‑1 (MQ=255)
                                            aaGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAA.AAAAGc                                                       >  1:2011075/1‑101 (MQ=255)
                                             aGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCg                                                      <  2:2638828/101‑1 (MQ=255)
                                             aGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCg                                                      <  1:2993196/101‑1 (MQ=255)
                                                aTGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGaaa                                                   <  2:1733834/101‑1 (MQ=255)
                                                aTGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGaaa                                                   <  2:1292620/101‑1 (MQ=255)
                                                aTGGTGCCCCGCTCTTGCCAGTCCATGGTGCCCCAGACAAA.GG.CC...GAAGCTGTGGCA.CCCCCGAGCCCCCGCAGGAGAGGGGAGGCAAAAA.AAAAGCGaaa                                                   <  1:3834014/101‑1 (MQ=255)
                                                 tGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CCG..GGGGGGTTTTAA.CCCCCCGCCCCCCCCCGGGGATTTGTGGCAAAAA.aaaaagaaaa                                                   >  2:1557462/1‑95 (MQ=255)
                                                 tGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAg                                                  <  1:2663345/101‑1 (MQ=255)
                                                 tGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTTCACCCCCCGGGCCCCCCCGGGACATTT.AGGGCAGAT.AAAAGAGAAAg                                                  >  1:3830929/1‑101 (MQ=255)
                                                  ggTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGc                                                 <  2:253199/101‑1 (MQ=255)
                                                   gTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGcc                                                <  1:2893230/101‑1 (MQ=255)
                                                     gCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCgg                                              >  2:3992311/1‑101 (MQ=255)
                                                       cGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCgggg                                            <  2:2480557/101‑1 (MQ=255)
                                                       cGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCgggg                                            <  2:730359/101‑1 (MQ=255)
                                                        gCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGt                                           <  2:3372908/101‑1 (MQ=255)
                                                         cTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTTCA.CCCCCCGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCgggggc                                          >  1:3379711/1‑99 (MQ=255)
                                                         cTGTCTTGCCAGTCCATGGAGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTc                                          <  1:4133379/101‑1 (MQ=255)
                                                          tGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCa                                         <  1:1772740/101‑1 (MQ=255)
                                                          tGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCa                                         <  1:3562282/101‑1 (MQ=255)
                                                          tGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCa                                         <  1:540680/101‑1 (MQ=255)
                                                          tGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCa                                         <  1:173801/101‑1 (MQ=255)
                                                           gTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTTCA.CCCCCGGGCCCCCCCAGGATATTTGAGGGAAGAT.AAAAGCGAAAGCCGGGGGCAg                                        >  2:906624/1‑101 (MQ=38)
                                                           gTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTTCA.CCCCCCGGCCCCCCCCGGATATTTTAGGCAAGAA.AAAAACGAAAACCggggggag                                        >  2:1032745/1‑97 (MQ=255)
                                                              ttGCCAGTCCATGGTGCCCGTGACGAA.GGCCC...GGGGGTTTTGAC.CCCCCGGGCCCCCCCAGGGCTTTTTGGGAAGGAA.AAAAGGGAAAACGgggggagggt                                      >  1:3867819/1‑95 (MQ=255)
                                                              ttGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTGCA.CCCCCGGGCCCCCGCAGGGTATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCt                                     >  2:3952272/1‑101 (MQ=255)
                                                               tGCCAGTCCATGGTGCCCGTGACGAA.GGCCC...GGGGGTTTTTAC.CCCCCCGGCCCCCCCGGGA.ATTTTTGGGGAGATAAAAAGGGAAACCCggggcaggctt                                     >  2:139002/1‑94 (MQ=255)
                                                               tGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGGTTTGCA.CCCCCCGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAACGAAAACCCGGGGCAGTCtt                                    >  2:3058370/1‑101 (MQ=37)
                                                                gCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCttt                                   <  2:2648856/101‑1 (MQ=255)
                                                                 ccAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTc                                  <  1:3720229/101‑1 (MQ=255)
                                                                      gcATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTcc                             <  2:2363004/100‑1 (MQ=255)
                                                                         tGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCACTCCGTc                          <  2:1893938/101‑1 (MQ=255)
                                                                           gTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCtt                        <  2:3830672/101‑1 (MQ=255)
                                                                             gCCCGTGACGAA.GG.CCG..GGGGGTTTTGAC.CCCCCGGCCCCCCCCGGGAATTTTGGGGCAAAAA.AAAAAGGAAAACCGGGGCCGGACTTTCGGTcccctttc                       >  1:3884279/1‑95 (MQ=255)
                                                                               ccGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATc                    <  2:915283/101‑1 (MQ=255)
                                                                                  tGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAg                 <  2:2940279/101‑1 (MQ=255)
                                                                                   gACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGa                <  1:139026/101‑1 (MQ=255)
                                                                                   gACGAA.GG.CC...GGGGGGTTTGCA.CCCCCGGGGCCCCCCAGGATATTTGAGGCAAGAT.AAAAACGAAAGCCGGGGGCAGTCTTTTCGTCCGTCTTCATCCCGa                >  2:1127157/1‑101 (MQ=37)
                                                                                      gAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGc             >  2:1248100/1‑101 (MQ=255)
                                                                                       aa.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCg            >  2:1133686/1‑101 (MQ=255)
                                                                                          gg.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTg          <  2:1939568/101‑1 (MQ=255)
                                                                                          gg.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTg          >  1:1043227/1‑101 (MQ=255)
                                                                                             cc...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCg        <  1:709891/101‑1 (MQ=255)
                                                                                                  gggggTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGc      <  1:4019792/101‑1 (MQ=255)
                                                                                                  gggggTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGc      >  1:2349483/1‑101 (MQ=255)
                                                                                                  gggggTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGc      <  2:4199061/101‑1 (MQ=255)
                                                                                                     ggTTTTGCC.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGt   <  1:106474/101‑1 (MQ=255)
                                                                                                     ggTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGt   <  2:2017712/101‑1 (MQ=255)
                                                                                                     ggTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGt   <  1:2554842/101‑1 (MQ=255)
                                                                                                     ggTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGAAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGt   >  2:1412585/1‑101 (MQ=255)
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AACACCTCGACAATCGCCGAGCTTTCGCCGTGCAGGCGGGTCGAAAGGATGGTGCCGCTGTCTTGCCAGTCCATGGTGCCCGTGACGAA.GG.CC...GGGGGTTTTGCA.CCCCCGGGCCCCCGCAGGATATTTGAGGCAAGAT.AAAAGCGAAAGCCGGGGTCAGTCTTTCAGTCCGTCTTCATCCAGAAGCGTGCGGCCGTG  >  NC_014034/3504034‑3504231

Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 41 ≤  ATCG