New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	57 (0.290)	46 (0.240)	8/184	25.7	0.51	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
	?	NC_014034	2070642 =	32 (0.150)					intergenic (+57/+115)	dcd/guaB	deoxycytidine triphosphate deaminase/inosine‑5'‑monophosphate dehydrogenase
Rejected: Position hash score below cutoff.

CCAGGGGCTGAAGCTCGCCAAGCATTTCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCC.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATT  >  NC_014034/2070546‑2070742                                                                                                     |                                                                                                      ccgggggCGGAGGCTCGCCAAGCTTTCCCGCGGGGGGGGGGGGG.CGCGGGGATGGTTTCCGCCGCGGCTTT.GCCGGC.GGCGCCCCGCCGGGGGGCGCTGcc                                                                                                    <  2:1056688/98‑1 (MQ=255)  cAGGGGCTGAAGCTCGCCAAGCATTTCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCCGGGGGGCGCTGccc                                                                                                   >  1:1070549/1‑101 (MQ=255)      gccTGAAGCCCGCCAAGCTTTCCGGGGGGGGGGGGGGGG.CGCGGGGTGGGTTTCCGCCGCGGTTTG.CCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCg                                                                                               <  2:1028199/99‑1 (MQ=255)       gCTGACGCCCGCCACGCTTTCCCGGGGGGGGGGGGGGG.CGGGGGGGGGGTTTCCGCCGGGTTTTT.GCCTGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCgg                                                                                              <  2:4031710/101‑1 (MQ=255)          gacgccccccAGGCTTTCCCGGGGGGGGGGGGGGG.CGGGGGGAGGGTTTTCGCGGGGGTTTT.GCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGAcc                                                                                           <  1:590753/93‑1 (MQ=255)              cccGCCAAGCTTTCCGGGGGGGGGGGGGGGG.CGGGCGGTTGCTTTCCGCCG.GGTTTT.TCCCGCGGGCCCCCCGCCGGGGGGCGCTGCCCCCCGGAcccccc                                                                                       <  2:2136990/99‑1 (MQ=2)               ccGCCAAGCTTTGCCGGGGGGGGGGGGGGG.CGGGGGGATGGTTTCCGCGGCTGTTTT.CCCTGC.GCCACCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCg                                                                                      <  2:3941462/100‑1 (MQ=9)                 cccAAGCTTTTCCGGGGGGGGGGGGGGG.GGCGGGGAGGTTTTCCGCCGCGGTTTC.CCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCggg                                                                                    <  1:3070898/100‑1 (MQ=12)                   cAAGCCTTTCGGGGGGGGGGGGGGGG.CGCGCGGGGGGTTTCCCCCGCGGTTTT.CCCTGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGat                                                                                  <  1:3403679/101‑1 (MQ=16)                    caGCCTTTCCGGGGGGGGGGGGGGGCCCCGGGGATGGTTTCCGCCGGGCTTTT.GCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGat                                                                                  <  2:17531/100‑1 (MQ=12)                        gttcccggggggggTGGGGGG.CGGGGGGTTGGTTCCCCCCGGGGTTTT.GCCCGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATAtttt                                                                             <  2:827543/91‑1 (MQ=9)                         tttCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCCGGGGGGGGCGGCCCCCCCGCCCCCCCCGGGCAttttt                                                                            >  2:2042368/1‑100 (MQ=25)                             gggggggggGGGGGGG.GGCGCGGGTTGTTTCCGCCGGGTTTTT.GCCGGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCa                                                                        <  1:122586/96‑1 (MQ=9)                               ggcgGGGGGGGGGG.CGCGCGTATGGTTCCCGCCGCGTCTTG.GCCGGC.GCCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAg                                                                      <  2:112545/100‑1 (MQ=12)                                   gggggggggg.GGCGCGGTTGGTTTCCGCCGCGGCTTG.CCCGGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGa                                                                  <  1:2963998/95‑1 (MQ=12)                                             ggggcggggtgggtTTCCCCGGCGCTTTGGCCGGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAg                                                          <  1:2538679/92‑1 (MQ=12)                                                cgcgGGTGGTTTCCGCCGCGGTTTC.GCGGGC.GCCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGgt                                                      <  2:439803/101‑1 (MQ=17)                                                     ttggttTCCGCCGCGGCTTG.CCCGGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTg                                                 <  2:513793/100‑1 (MQ=18)                                                      ttgttctCGCCGGGGCTTC.GCCGGC.GCCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTCGc                                                <  1:804434/95‑1 (MQ=17)                                                      tggttccccccgcGTCTTC.GCCTGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGc                                                <  1:804435/92‑1 (MQ=18)                                                        gttccccccgcGTCTTC.GCCCGC.GGCGCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCg                                              <  1:1263605/94‑1 (MQ=21)                                                                  cttcTTT.GCCTGC.GGCCCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.aa                                   <  2:3737758/98‑1 (MQ=25)                                                                           ccggc.ggccCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGcc                           <  1:121700/98‑1 (MQ=25)                                                                           cccgc.ggccCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGcc                           <  2:1728311/98‑1 (MQ=25)                                                                             cgcgccccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCg                          <  1:2995924/92‑1 (MQ=25)                                                                               c.ggcgCCCCGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCgggg                       <  1:2240803/101‑1 (MQ=255)                                                                                   ccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGttt                    <  2:1132203/98‑1 (MQ=255)                                                                                   ccccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGttt                    <  2:3963851/98‑1 (MQ=255)                                                                                     ccccGCCGGGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTcc                  <  1:1627902/100‑1 (MQ=255)                                                                                        cgccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTccccc               <  1:2042506/96‑1 (MQ=255)                                                                                        cgccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTccccc               <  2:3220148/96‑1 (MQ=255)                                                                                         gccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCg              <  2:434607/97‑1 (MQ=255)                                                                                         gccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCg              <  2:3603934/97‑1 (MQ=255)                                                                                         gccggggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCg              <  1:1021121/97‑1 (MQ=255)                                                                                             gggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGccc          <  1:1096821/101‑1 (MQ=255)                                                                                             gggggCGCTGCCCCCCCGGCCCCCCGGGAAATTTTCGGCAAGATGAAAGGGGAGCGGCGTTTTCCGGGGCACAGAAAAAAGGGGCGGGGTTCccccagacc           >  2:3971646/1‑96 (MQ=9)                                                                                              ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTGTCCCCCGGCCCt         >  1:4075478/1‑101 (MQ=255)                                                                                              ggggCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGGTTCCCCCGGCCCt         >  1:1621999/1‑101 (MQ=255)                                                                                                 gcgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTtgt      <  2:3005702/101‑1 (MQ=255)                                                                                                  cgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTtgtg     <  1:188254/101‑1 (MQ=255)                                                                                                  cgcTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTtgtg     <  2:763669/101‑1 (MQ=255)                                                                                                    cTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGTCCCTTGTGAt   >  1:3706531/1‑101 (MQ=255)                                                                                                     tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt  >  2:3475817/1‑101 (MQ=255)                                                                                                     tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt  >  2:3003600/1‑101 (MQ=255)                                                                                                     tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt  >  2:283153/1‑101 (MQ=255)                                                                                                     tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt  >  2:770611/1‑101 (MQ=255)                                                                                                     tGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGAtt  <  2:831875/101‑1 (MQ=255)                                                                                                     |                                                                                                      CCAGGGGCTGAAGCTCGCCAAGCATTTCCGCGCGGGGTGAGGGG.CGCGCGGATGGATTTCGCCGCGGCTTT.GCCTGC.GGCGACCCGCC.GGGGGCGCTGCCCCCCGGACCCCCCGGGATATTTTCGGCAAGATGAAGGGGAAGCGGTGTTTGCCGGTACACAG.AAAAAGGGCCGGGGTTTCCCCCGGCCCTTGTGATT  >  NC_014034/2070546‑2070742 Base quality scores:  ATCG  < 3 ≤  ATCG  < 22 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG