New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1640006 =	81 (0.390)	13 (0.060)	3/198	31.5	0.16	intergenic (+86/‑59)	mccB/mccA	methylcrotonoyl‑CoA carboxylase subunit beta/methylcrotonoyl‑CoA carboxylase subunit alpha
	?	NC_014034	3329497 =	55 (0.260)					intergenic (‑32/+37)	argF/argD	ornithine carbamoyltransferase/acetylornithine aminotransferase
Rejected: Position hash score below cutoff.

GCGGGCGCTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATG  >  NC_014034/3329397‑3329597                                                                                                      |                                                                                                       gcgGGCGCTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGctct                                                                                                        <  1:3687061/101‑1 (MQ=255)  cgGGCGCTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGgtctc                                                                                                       >  2:957037/1‑100 (MQ=255)  cgGGCGCTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.g                                                                                                      <  1:4011457/101‑1 (MQ=255)  cgGGCGCTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.g                                                                                                      <  2:575280/101‑1 (MQ=255)    ggCGCTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCCGGGGCTCT.G.cc                                                                                                   >  2:2097588/1‑101 (MQ=255)     gcgcTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.ccc                                                                                                  <  2:776128/101‑1 (MQ=255)     gcgcTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.ccc                                                                                                  <  1:3411024/101‑1 (MQ=255)      cgcTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.cccc                                                                                                 <  2:6432/101‑1 (MQ=255)      cgcTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.cccc                                                                                                 <  1:2183544/101‑1 (MQ=255)       gcTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.ccccc                                                                                                <  1:92269/101‑1 (MQ=255)        cTGTTGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCg                                                                                               <  2:3335409/101‑1 (MQ=255)        cTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCg                                                                                               <  2:1438274/101‑1 (MQ=255)        cTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCCGGGGGGCT.G.CCCCCg                                                                                               >  2:3438857/1‑101 (MQ=255)         tggcGAGCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCgg                                                                                              <  2:343068/98‑1 (MQ=255)         tGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCgg                                                                                              <  2:820495/101‑1 (MQ=255)         tGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCgg                                                                                              <  2:905923/101‑1 (MQ=255)           tCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGAc                                                                                            <  2:1707791/101‑1 (MQ=255)            cGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGGTAT.G.CCCCCGGCcc                                                                                           >  2:2719775/1‑101 (MQ=255)             gATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGAccc                                                                                          <  2:2165807/101‑1 (MQ=255)               tcatcGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGAccccc                                                                                        <  2:1127796/101‑1 (MQ=255)                  tcGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCggg                                                                                     <  1:1045296/101‑1 (MQ=255)                     aGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGata                                                                                  <  2:329594/101‑1 (MQ=255)                     aGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGata                                                                                  <  2:2526250/101‑1 (MQ=255)                      gcgcAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCCCTGG.CCCCGGGACCCCCgggtat                                                                                  >  2:2510627/1‑98 (MQ=255)                       gatctaTCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATAtt                                                                                <  2:1190477/96‑1 (MQ=255)                       cgcAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATAtt                                                                                <  2:3043624/101‑1 (MQ=255)                        gcAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATAttt                                                                               <  1:3037161/101‑1 (MQ=255)                         cAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGGTCT.GCCCCCCGGCCCCCCggggatttt                                                                               >  1:3362649/1‑95 (MQ=255)                           gATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCCGGGGGTCTGG.CCCCCGGCCCCCGGGGGTTTTtgt                                                                             >  2:3361812/1‑101 (MQ=255)                            aTCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCCGCCCCCCcgggctttagatc                                                                           >  1:1190571/1‑91 (MQ=255)                                gCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAg                                                                       <  2:327969/101‑1 (MQ=255)                                        ggtggtGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGGCCCCCGGGATATTTGTGGCAAGATAAATCa                                                               >  1:530072/1‑101 (MQ=255)                                        ggtggtGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCCGGGGGGCT.G.CCCCCCGGCCCCCCCGGGATTTTTTGGAAGATaaaaaa                                                               >  2:3910469/1‑98 (MQ=255)                                         gtggtgTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAg                                                              <  1:149997/101‑1 (MQ=255)                                                        aaaaagTGCGTCATGTCGGTTGCCTGGCCAGGC.GGCCGGGGGCGCT.G.CCGCCGGAGGCCCGGGATATTTGTGGGAAGATAAATCAGGCCGGTTGGGtttgg                                               <  2:61997/99‑3 (MQ=255)                                                        aGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGGGCT.G.CCCCCCGGCCCCCCGGGGATTTTTGGGAAGAAAAAAAAGGGCGGGTGGGgtttg                                               >  1:2773196/1‑99 (MQ=255)                                                        aGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCg                                               <  2:884539/101‑1 (MQ=255)                                                              tGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGaa                                         <  1:2706222/101‑1 (MQ=255)                                                              tGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCCGGGGGTCT.G.CCCCCCGCCCCCCCGGGGATTTTTGGGAAGATAAATCAGGCCGGGTGGGGTTTGAGCgga                                         >  1:724116/1‑99 (MQ=255)                                                                   cATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAgcggc                                    <  1:3396232/101‑1 (MQ=255)                                                                       tCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAgcggcggcg                                <  1:3716915/101‑1 (MQ=255)                                                                         ggTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCggcggcggc                              <  1:2654651/101‑1 (MQ=255)                                                                         ggTTTCCTTG.CGAGCGGGCCGGGGGCCTT.G.CCCCCGGACCCCCGGGGGTTTTTGGGCAAGAAAAATAGGGCGGGTGGGGGTTCG.GGGGAGcggcggggggg                             >  2:2595707/1‑99 (MQ=255)                                                                           tttCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCAt                            <  2:4100567/101‑1 (MQ=255)                                                                            ttCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATc                           <  1:1150220/101‑1 (MQ=255)                                                                              ccTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGGTATTTGTGGCAAGATAAATAAGGCCGGTTGGGGTTCGAGCGAAGAGGCGGGGGCATCaa                         >  2:1320060/1‑101 (MQ=37)                                                                                ttGCCGAGC.GGCCGGGGGGTCT.G.CCCCCGGACCCCCCGGGTATTTGTGGGAAGATAAATAAGGCCGGGTGGGGTTCGGGCGAAGCGGGGGGGGGATccaag                       >  2:2044247/1‑97 (MQ=21)                                                                                      aGC.GGCCGGGGGATCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGGTTCGAGCGAAGCGGCGGCGGCATCAAGGcggggg                 >  2:2281197/1‑101 (MQ=255)                                                                                        c.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGAc               <  2:819392/101‑1 (MQ=255)                                                                                          ggCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACg              >  1:1661804/1‑101 (MQ=255)                                                                                            ccGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGc            <  1:957122/101‑1 (MQ=255)                                                                                            ccGGGGGCTCT.G.CCCCCCGACCCCCGGGGTATTTTTGGCCAGATAAAACAGGCCGGGTGGGGTTCGAGGGAAGGGGCGGGGGCATCCAGGGGGGGGGCggg            >  2:4100266/1‑100 (MQ=16)                                                                                               ggggCTCT.G.CCCCCGGCCCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTc         <  2:2600537/101‑1 (MQ=255)                                                                                                  gCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCCGc      >  2:1026789/1‑101 (MQ=255)                                                                                                    tct.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCa    >  1:478700/1‑101 (MQ=255)                                                                                                     ct.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGGTGGGATTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCAt   >  1:38401/1‑101 (MQ=255)                                                                                                     ct.G.CCCCCGGACCCCCGGGATATTTGGGGCAAGAAAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGGGGGATCAAGGGGGGGGACGGCCCCGGCCAt   >  2:2062692/1‑101 (MQ=37)                                                                                                      t.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATg  <  1:3910728/101‑1 (MQ=255)                                                                                                      t.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATg  <  2:2543765/101‑1 (MQ=255)                                                                                                      |                                                                                                       GCGGGCGCTGTCGATCATCGAGCGCAGATCGGCCGGGCTGGTGGTGTGGATGTCAAGAAAATGGGTCATGTCGGTTTCCTTGCCGAGC.GGCCGGGGGCTCT.G.CCCCCGGACCCCCGGGATATTTGTGGCAAGATAAATCAGGCCGGTTGGGTTTCGAGCGAAGCGGCGGCGGCATCAAGGCGGCGGACGGCCTCGGCCATG  >  NC_014034/3329397‑3329597 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG