New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1732870 =	21 (0.130)	28 (0.170)	13/154	19.3	0.49	intergenic (‑294/‑109)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
	?	NC_014034	= 2474937	37 (0.170)					intergenic (‑100/+26)	RCAP_rcc02301/engA	hypothetical protein/GTP‑binding protein EngA
Rejected: Position hash score below cutoff.

GACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGCGGGGGGGCGCAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAG  >  NC_014034/2474841‑2475037                                                                                                    |                                                                                                         gACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGGCGccc                                                                                                     >  1:191671/1‑100 (MQ=255)  aCAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGGGC.GGGGGGCGCAGCCCCCC..GC.GGGGCGcccc                                                                                                    >  1:1966771/1‑99 (MQ=39)       aacccGCGGCCCCCCCCGCCCGAACGGCCCGTCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGTCGCAGCCCCCA..GC.GGGTCGCCTC.GGGCt                                                                                              <  1:3072609/98‑1 (MQ=25)       aaaCCGCGGCCCCCCCCCCCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAACGCGGGGGCCGC.GGGGGGCGCGGCCCCCC..GC.GCGTCGCCCC.CGGcc                                                                                              >  2:2019823/1‑100 (MQ=255)       aaaCCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGGCGCCCC.CGGcg                                                                                              >  2:3423260/1‑100 (MQ=37)                                      gCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGGCGCCCC.CGGCTTGGCCCGGGGGG.CATCC.G.GCCCTCGGtgggg                                                            >  1:988341/1‑97 (MQ=12)                                       cTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGTAGCCTC.GGGCTTGCCCGGGGCGG.CAACA.GACCCTCCGGttcta                                                            >  2:304394/1‑98 (MQ=18)                                        ttttCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGGCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCCTCCGGTTCGAg                                                          >  2:3963072/1‑101 (MQ=21)                                        ttttCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGGCGCCCC.GGGCTTGCCCCCGGGGG.CATCC.G.CCCCTCGGGTTCgcg                                                          >  1:2250578/1‑99 (MQ=18)                                          ttCCTTGGCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGGCGCCTC.GGGGTTGCCCCAGGGGG.CATCA.G.CCCCTCCGGTTctgggg                                                        >  2:1507325/1‑96 (MQ=18)                                                ggCCAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGTCGCCCC.GGGCGTGGCCCAGGGGACCACCA.C.CCCTCCGGTTTccgggccagcc                                                   >  1:3974852/1‑91 (MQ=12)                                                   cAAATACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCCGGGCCtt                                               >  2:3969989/1‑101 (MQ=255)                                                      aTACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGGCGCCCC.GGGCTTGCCCGGGGGGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTc                                            >  1:3073577/1‑101 (MQ=25)                                                      aTACGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGCCGCCTC.CGGCTTGCCCGCGGCGA.GAGCA.C.CCCCCCGGCTTCGAGGGCGGGCCCCTGTc                                            >  1:4175514/1‑101 (MQ=12)                                                         cGCAAGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGGCGCCCC.GGGGCTGCCCCCGGCGG.CAACA.G.CCCCTCCGGTTTGAGGGGAGGGCCCTGTccct                                         >  2:1450068/1‑99 (MQ=9)                                                            aaGGCGGGGGGTGC.GGGGGGCGCAGCCCCCC..GC.GGGGCGCCCC.CGGGTTGCCCGCGGGGG.CCCCC.G.CCCCTCGGGTTCGCGGGCCGGGCCCTGGCCCtgcg                                      >  1:408598/1‑101 (MQ=9)                                                              gggggggggGGGGGGGGGGCCCCCCCCCCCGGGC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTtgc                                       <  1:3423505/98‑1 (MQ=25)                                                                 ggggggTGC.GGGGGGCGCAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGGCCGAGGCGA.CATCA.G.GCCTTCGGTTTCGAGGGGCGGGCCCTGTCCTTCCGTgcgg                                 >  2:2367299/1‑101 (MQ=18)                                                                 ggggggTGC.GGGGGGCGCAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTTCGTgcgg                                 >  2:2628960/1‑101 (MQ=255)                                                                  gggggTGC.GGGGGGCGCAGCCCCCC..GC.GGGGCGCCCC.CGGGTTGCCCCGGGGGG.CCTCAGG.CCCTCGGGTTTGGGGGCCGGGCCCTTTCCCTTGC.Tgcggg                                >  1:3307961/1‑100 (MQ=2)                                                                   ggggTGC.GGGGGGCGCAGCCCCCC..GC.GGGTCGCCCC.CGGCGTGCCCGCGGGGG.CAACA.C.CCCCTCGGTTTTTAGGGGAGGCCCCCGTCCTTGCGTgcggcg                               >  1:2226798/1‑101 (MQ=12)                                                                    gggTGC.GGGGGGCGCAGCCCCCC..GC.GGGGCGCCTC.GGGGTTGCCCGGGGGGG.CATCA.G.CCCCTCGGTTTCGAGGGGAGGGCCCTGTCCCTGCGGgcggggg                              >  1:764335/1‑98 (MQ=255)                                                                       gtgcggggggCGCAGCCCCCC..GC.GGGTCGCCTCGGGGCTTCCCCGCGG.GG.CGACA.G.CCCCTCCGGTTCGCGGGCCGGCCCCTGTCCTTTCGGgcggggcgg                            >  1:2443415/5‑96 (MQ=9)                                                                       gtgcggggggCGCAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGCCCGAGGGGA.CATCA.G.CCCTTCGGGTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCgtgt                            >  2:477370/5‑101 (MQ=255)                                                                        tgcggggggCGCAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGCCCGGGGCGG.CATCC.G.CCCCTCGGTTTCGAGGGCAGGGCCCTGTCCTTGCGTGCGGGGGGtt                           >  1:3100059/4‑101 (MQ=21)                                                                         gcggggggCGCAGCCCCCC..GC.GGGTCGCCCC.CGGCTTGCCCCAGGGGG.CATCA.G.CCCTTCGGGTTCTAGGGCAGGCGCCTGTCCTTTCGTGCGGCGTGttt                          >  2:3106388/3‑101 (MQ=21)                                                                          cggggggCGCAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTttc                         <  2:764258/100‑1 (MQ=255)                                                                          cggggggCGCAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTttc                         >  2:1347670/2‑101 (MQ=255)                                                                          cggggggCGCAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTttc                         >  2:1332650/2‑101 (MQ=255)                                                                           ggggggCGCAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CCTCA.G.CCCTTCGGTTTTGAGGGGAGGGCCTTGTCCTTGCGTgcggcggggtttt                        >  1:1898173/1‑94 (MQ=25)                                                                           ggggggCGCAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGGCCTTGTCCTTGCGTGCGGCGTGTttct                        >  2:2595740/1‑101 (MQ=255)                                                                            gggggCGCAGCCCCCC..GCGGGGGCCCCCC.GGGCTTGCCCGGGGGGC.CAACA.C.CCCTCCGGTTTTGGGGGGGGGCCCTTTCCCTTGCGGGGGGGGGGttttt                        >  2:3061444/1‑99 (MQ=255)                                                                            gggggCGCAGCCCCCC..GC.GGGTCGCCTC.GGGGTTGCCCGAGGCGG.CATCA.G.CCCTTCGCTTTCGAGGGCAGGCCCCTGTCCTTGCGGTCGGCGTGTttttt                       >  1:1251705/1‑101 (MQ=25)                                                                                   cAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGGGTTTCTTCGCCTCg                >  2:1019811/1‑101 (MQ=255)                                                                                        cccggggc.gGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACg             <  2:140935/95‑1 (MQ=255)                                                                                         ccc..GC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGCCGGGc          >  1:1609236/1‑101 (MQ=255)                                                                                          cc..GC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGCGCGGCGGGTTTTTTTGCCTCGACGTGCt         >  2:638142/1‑101 (MQ=38)                                                                                               c.gGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCg      <  1:304439/101‑1 (MQ=255)                                                                                                 gggTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGt     >  2:1840233/1‑101 (MQ=255)                                                                                                   gTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCa   <  1:2629152/101‑1 (MQ=255)                                                                                                    tCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAg  <  2:2725017/101‑1 (MQ=255)                                                                                                    tCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAg  >  2:4108371/1‑101 (MQ=255)                                                                                                    |                                                                                                         GACAGGAAACCGCGGCCCCCCCCACCCGAACGGCCCGGCTTTTCCTTGGCCAAATACGCAAGGCGGGGGGTGCGGGGGGGCGCAGCCCCCC..GC.GGGTCGCCTC.GGGCTTGCCCGAGGCGA.CATCA.G.CCCTTCGGTTTCGAGGGCAGGCCCTTGTCCTTGCGTGCGGCGTGTTTCTTCGCCTCGACGTGCTTCGTCAG  >  NC_014034/2474841‑2475037 Base quality scores:  ATCG  < 3 ≤  ATCG  < 15 ≤  ATCG  < 22 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG