New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	235596 =	86 (0.410)	17 (0.080)	3/200	31.7	0.20	intergenic (+25/+186)	RCAP_rcc00200/RCAP_rcc00201	MarR family transcriptional regulator/adenine‑specific DNA‑methyltransferase
	?	NC_014034	900797 =	48 (0.230)					intergenic (‑126/‑161)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
Rejected: Position hash score below cutoff.

AACCCCGTTTCCG.CGCGG.CGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GC...CGCGGAG..CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAG  >  NC_014034/900725‑900875                                                                                    |                                                                                 aaCCCCGTTTCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCg                                                           >  2:2131464/1‑101 (MQ=16) aaCCCCGTTTCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCg                                                           >  2:1563191/1‑101 (MQ=16)      cGTTCCCGCCGCGGCCGCCGCTTTGCCGCGGCCCCGGTTTTCCTTGGTGCAAATCCGCCG...GGGGGTGGGGG...GGCGGAGCCCCCGCGGGTCGCCCCGGCCCt                                                      <  1:3835906/101‑1 (MQ=9)       gTTTCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGTAGCCCCCGCGGGTCCCCCCGGCCCTg                                                     >  2:730911/1‑101 (MQ=16)       gTTTCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCtc                                                     >  1:3244644/1‑100 (MQ=16)       gTTTCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTg                                                     >  2:2239609/1‑101 (MQ=16)         ttCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGcc                                                   >  2:3382714/1‑101 (MQ=16)         ttCCGCCGCGGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGcc                                                   >  2:886575/1‑101 (MQ=16)         tcccgccgcgGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGcc                                                   <  2:603174/95‑1 (MQ=16)            cgccgcgGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCggg                                                >  1:2003301/4‑101 (MQ=18)             gccgcgGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCgggg                                               >  2:4055007/3‑101 (MQ=18)             gccgcgGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCgggg                                               >  2:603206/3‑101 (MQ=18)              ccgcgGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGc                                              >  2:2298178/2‑101 (MQ=18)               cgcgGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCg                                             >  1:366158/1‑101 (MQ=18)               cgcgGCCGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCg                                             >  2:2759122/1‑101 (MQ=18)                gcggccgccgcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGa                                            >  1:1756267/6‑101 (MQ=18)                   gccgccgcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAg                                         >  2:3815292/3‑101 (MQ=18)                      gccgcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGccc                                      >  1:714340/1‑101 (MQ=21)                      gccgcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGccc                                      >  2:4200814/1‑101 (MQ=21)                      gccgcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGccc                                      >  2:4109345/1‑101 (MQ=21)                      gccgcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGccc                                      >  2:23362/1‑101 (MQ=21)                      gccgcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGccc                                      >  2:3798529/1‑101 (MQ=21)                         gcTTTGCCGCAGCCCGGTTTTTCCTTGGTGCAAATACGCCCGGGGGGGGG...GG...GGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCcg                                   <  2:1089219/101‑1 (MQ=12)                         gcTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCcg                                   >  1:557589/1‑101 (MQ=18)                            ttGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCcgcgc                                >  2:2191234/1‑101 (MQ=18)                             tGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCcgcgcg                               >  1:4170343/1‑101 (MQ=18)                              gCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCgcgcgc                              >  1:1119651/1‑101 (MQ=18)                              gCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCgcgcgc                              >  1:2341451/1‑101 (MQ=18)                                 gCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGcgccgc                           >  2:3346217/1‑101 (MQ=18)                                   aGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCgg                         <  2:725884/101‑1 (MQ=18)                                   aGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCCCGCGCCGCgg                         >  1:811039/1‑101 (MQ=18)                                     ccccGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGcc                       >  2:923766/1‑101 (MQ=18)                                      cccGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGccc                      >  2:2719777/1‑101 (MQ=18)                                       ccGGTTTTCCTTGGTGCAAATGCGCCC...GGGGGTGGGGG...GGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCg                     <  2:1242294/101‑1 (MQ=18)                                       ccGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCg                     >  2:517743/1‑101 (MQ=18)                                       ccGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCg                     >  1:4100082/1‑101 (MQ=18)                                        cGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCgg                    >  2:3540626/1‑101 (MQ=18)                                          gTTTTCCTTGGTGCAAATACGCCC...GGGGGG...GCGGGGGCGGAGCCCCCGCGGGTGGCCCCGGCCCTGCCGGGGCGAAAGCCCCAGCGCGGCGCGGCCCGGcg                  >  2:3662230/1‑100 (MQ=16)                                           ttttCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCaa                 >  1:605818/1‑101 (MQ=18)                                            tttCCTTGGTGCAAATCCGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCaaa                <  2:3390407/101‑1 (MQ=18)                                            tttCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCaaa                >  2:3920599/1‑101 (MQ=18)                                             ttCCTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCaaaa               >  2:3956511/1‑101 (MQ=18)                                              tCCTGGGTGCAAATCCGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAg              <  2:3244403/101‑1 (MQ=18)                                               ccTTGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGc             >  2:574680/1‑101 (MQ=18)                                                  tGGTGCAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGctct          >  2:2401250/1‑101 (MQ=18)                                                       cAAATACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCa     >  2:3529786/1‑101 (MQ=18)                                                        aaaTACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCag    >  2:1756563/1‑101 (MQ=18)                                                          aTACGCCC...GGGGGT...GCGGGGGCGGAGCCCCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCagag  >  2:4155151/1‑101 (MQ=18)                                                                                    |                                                                                 AACCCCGTTTCCG.CGCGG.CGCCGCTTTGCCGCAGCCCCGGTTTTCCTTGGTGCAAATACGCCC...GGGGGT...GC...CGCGGAG..CCCGCGGGTCGCCCCGGCCCTGCCGGGGCGAAAGCCCCCGCGCGCCGCGGCCCGGCAAAAGCTCTGGTCAGAG  >  NC_014034/900725‑900875 Base quality scores:  ATCG  < 3 ≤  ATCG  < 17 ≤  ATCG  < 25 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG