New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 3214783	NA (NA)	92 (0.530)	66/164	3.3	1.00	intergenic (‑39/+19)	dctQ3/dctP3	TRAP C4‑dicarboxylate transport system permease subunit DctQ/TRAP C4‑dicarboxylate transport system permease subunit DctP
	?	NC_014034	3214784 =	0 (0.000)					intergenic (‑40/+18)	dctQ3/dctP3	TRAP C4‑dicarboxylate transport system permease subunit DctQ/TRAP C4‑dicarboxylate transport system permease subunit DctP
Rejected: Position hash score below cutoff.

TCGCCGTCGCGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAGAA  >  NC_014034/3214684‑3214884                                                                                                               |                                                                                                     tcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........c                                                                                                      <  2:2626347/101‑1 (MQ=255) tcgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........c                                                                                                      >  2:724863/1‑101 (MQ=255)  cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                                                     <  2:3619307/101‑1 (MQ=255)  cgccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cg                                                                                                     >  1:3671966/1‑101 (MQ=255)   gccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cgg                                                                                                    >  1:1380940/1‑101 (MQ=255)   gccgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cgg                                                                                                    <  2:1159237/101‑1 (MQ=255)    ccgtcgcGATGCGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGgg..........cggc                                                                                                   <  2:3525413/101‑1 (MQ=255)     cgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGg..........cggcg                                                                                                  <  1:3262947/101‑1 (MQ=255)     cgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGg..........cggcg                                                                                                  >  2:3222090/1‑101 (MQ=255)     cgtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGg..........cggcg                                                                                                  >  1:911359/1‑101 (MQ=255)      gtcgcGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGgcgc                                                                                                 >  2:4126984/1‑101 (MQ=255)       gcgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........AGGcgcc                                                                                                <  1:2209156/100‑1 (MQ=255)        cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccg                                                                                               >  1:2133809/1‑101 (MQ=255)        cgcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccg                                                                                               >  2:3685594/1‑101 (MQ=255)         gcgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccgt                                                                                              >  1:1415174/1‑100 (MQ=255)          cgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGcgccgtc                                                                                             <  2:81441/101‑3 (MQ=255)          cgATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCgccgcc                                                                                             >  2:2731953/1‑101 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtcc                                                                                            >  1:1605177/1‑101 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtcc                                                                                            <  2:3434966/101‑1 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtcc                                                                                            >  2:1891642/1‑101 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtcc                                                                                            >  1:2645048/1‑101 (MQ=255)           gATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtcc                                                                                            <  2:2328689/101‑1 (MQ=255)            aTGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccg                                                                                           <  1:2892376/101‑1 (MQ=255)            aTGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccg                                                                                           <  2:41901/101‑1 (MQ=255)              gAGCGCGGCAATCAGCCCCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggc                                                                                         <  2:3541130/101‑3 (MQ=255)              gAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggc                                                                                         >  2:3940711/1‑99 (MQ=255)               aGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcg                                                                                        >  1:3384175/1‑98 (MQ=255)               aGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcg                                                                                        <  1:657654/101‑4 (MQ=255)                gctgggCAATCAGCACCGCTTGGCCCCGGTCTAGGAGGCGCAGCATGGCGTCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccggccggcgc                                                                                       <  2:312394/97‑5 (MQ=255)                 cgcgGCAATCAGCGTCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgcc                                                                                      <  2:3435712/101‑6 (MQ=255)                 cgcgGCAATCAGCGCCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgcc                                                                                      <  1:1937602/101‑6 (MQ=255)                 cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgcc                                                                                      <  2:2133664/101‑6 (MQ=255)                 cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgcc                                                                                      <  1:1130912/101‑6 (MQ=255)                 cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgcc                                                                                      >  1:185024/1‑96 (MQ=255)                 cgcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgcc                                                                                      <  1:1203857/101‑6 (MQ=255)                  gcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccg                                                                                     >  2:2588420/1‑95 (MQ=255)                  gcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccg                                                                                     <  1:1891762/101‑7 (MQ=255)                  gcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccg                                                                                     <  2:3139287/101‑7 (MQ=255)                  gcgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccg                                                                                     <  2:1496597/101‑7 (MQ=255)                   cgGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgc                                                                                    <  1:2680633/101‑8 (MQ=255)                    ggCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgcc                                                                                   >  1:2525394/1‑93 (MQ=255)                    ggCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........AGGCGccgtccggggccgcc                                                                                   >  2:2822598/1‑93 (MQ=255)                     gCAATCAGCCCCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgccc                                                                                  <  1:1095926/101‑10 (MQ=255)                     gCAATCAGCATCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgccc                                                                                  <  2:2591687/101‑10 (MQ=255)                     gCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgccc                                                                                  <  2:3700505/101‑10 (MQ=255)                     gCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgccc                                                                                  >  2:991297/1‑92 (MQ=255)                     gCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgccc                                                                                  >  2:2270095/1‑92 (MQ=255)                     gCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgccc                                                                                  <  1:553852/101‑10 (MQ=255)                      cAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTTGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgcccc                                                                                 >  1:2814729/1‑91 (MQ=255)                      cAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgcccg                                                                                 <  2:2078235/101‑11 (MQ=255)                      cAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGccgtccggcgccgcccg                                                                                 <  2:3321448/101‑11 (MQ=255)                                                   aTGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGa                                                              >  1:328559/1‑101 (MQ=255)                                                      cgcAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcgg                                                           >  1:1056635/1‑101 (MQ=255)                                                      cgcAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcgg                                                           >  1:2310800/1‑101 (MQ=255)                                                       gcagcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcggc                                                          >  2:1010688/1‑101 (MQ=255)                                                         agcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcggcgg                                                        >  1:3002164/1‑101 (MQ=255)                                                         agcaTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGAcggcgg                                                        >  2:2133619/1‑101 (MQ=255)                                                           caTGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGgcggcg                                                      >  2:843452/1‑101 (MQ=255)                                                              ggcggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATg                                                   >  1:954024/1‑101 (MQ=255)                                                               gcggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATgg                                                  >  2:3290233/1‑101 (MQ=255)                                                                 ggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATgggt                                                >  1:1544422/1‑99 (MQ=255)                                                                 ggcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGtt                                                >  2:2047833/1‑101 (MQ=255)                                                                  gcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGttt                                               >  2:3336487/1‑101 (MQ=255)                                                                  gcCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGttt                                               >  2:453634/1‑101 (MQ=255)                                                                    ccccGCTTAGGTCGTGGAAGGAAAGGGAAAGGGCGGCGCCGTCCGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCg                                             >  2:2016446/1‑101 (MQ=255)                                                                                                      ggcgccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGTCGCCGATCCGCTCGGCCATTTCGTCATGCACCg           >  1:1323646/10‑101 (MQ=255)                                                                                                       gcgccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCgg          >  1:3951025/9‑101 (MQ=255)                                                                                                          ccgtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGt       >  1:1180705/6‑101 (MQ=255)                                                                                                            gtccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCa     >  1:2664095/4‑101 (MQ=255)                                                                                                            ccccggccCCCCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCa     <  2:2507618/98‑1 (MQ=255)                                                                                                             tccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAg    >  1:249526/3‑101 (MQ=255)                                                                                                             tccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAg    >  1:3174544/3‑101 (MQ=255)                                                                                                              ccggcgCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAGa   >  1:2783272/2‑101 (MQ=255)                                                                                                               cggccCCCCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAGaa  <  2:1977090/101‑1 (MQ=255)                                                                                                               |                                                                                                     TCGCCGTCGCGATGAGCGCGGCAATCAGCACCTCTTCGGCCCGGTCGAGGATGCGCAGCATGGCGGCCCCCGCTTAGGTCGTGGAAGGAAAGGGAAAGGG..........CGGCGCCGCCCGCAGGTCTTATTCCGCCGTCGCGGCCTTGACGGCGGCGATGGTTTCGGCGCCGATCCGCTCGGCCATTTCGTCATGCACCGGGGTCAGAA  >  NC_014034/3214684‑3214884 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG