New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 744671	51 (0.260)	20 (0.100)	8/186	25.9	0.29	intergenic (+56/+156)	idi2/bchO	isopentenyl‑diphosphate delta‑isomerase/magnesium‑chelatase BchO
	?	NC_014034	1732717 =	45 (0.210)					intergenic (‑141/‑262)	RCAP_rcc01601/tgt	FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase
Rejected: Position hash score below cutoff.

GAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.A.CCGGGC..GGGCGG..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGG  >  NC_014034/1732622‑1732817                                                                                                        |                                                                                                     gagaGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.A.CCCCGG..GGGGGG..G..GGCCCCCCCcccc                                                                                                 >  1:970843/1‑101 (MQ=255)    agGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCAcccc                                                                                                 <  2:4151620/101‑1 (MQ=25)     ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCAccccc                                                                                                <  1:3287269/101‑1 (MQ=25)     ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCAccccc                                                                                                <  2:3159941/101‑1 (MQ=25)     ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCAccccc                                                                                                <  2:1678316/101‑1 (MQ=25)     ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCAccccc                                                                                                <  2:1609783/101‑1 (MQ=25)       tAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCgg                                                                                              <  1:3278563/101‑1 (MQ=25)       tAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCgg                                                                                              <  2:2756478/101‑1 (MQ=25)       tAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGC..GGGGGG..G..CCGCCCCCCccccccccc                                                                                            >  1:414817/1‑97 (MQ=255)        aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGC..GGGGGG..G..GCGCCCCCCcccccccccg                                                                                           >  2:2528008/1‑96 (MQ=255)              cGTCGGTGCGGGGCGGACGGCCGGGTGCCAAGCAGGGTTTCGCCGCGGGGGGGCCGCGGCGCC.CCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTAttt                                                                                       <  2:1530854/101‑1 (MQ=16)               gTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTg                                                                                      <  1:1894797/101‑1 (MQ=21)                tCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTgc                                                                                     <  1:1054370/101‑1 (MQ=21)                tCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGC..GGGGGG..GCCGCCCCCGCCCCCCCCGCggcctttg                                                                                     >  2:1030967/1‑94 (MQ=255)                    tGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCa                                                                                 <  2:3485951/101‑1 (MQ=21)                       ggggCGGAAAGCCGCGTGCCAGGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGTGCCaaga                                                                              <  2:1265441/101‑1 (MQ=18)                       ggggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTCTTTGCGCCaaga                                                                              <  1:2298605/101‑1 (MQ=21)                       ggggCAGAAGGCCGCGTGCCCAGAATGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGT..GGGGTGTCC..GCCCCCCCACCTCCGGCTTATTTGCGTCaaga                                                                              <  2:1080930/101‑1 (MQ=255)                        gggCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaa                                                                             <  2:941662/101‑1 (MQ=21)                         gcgagAAAGCCGCGTGCCAGGCGGGGGTGCGCGGCGGGGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaag                                                                            <  2:1469560/97‑1 (MQ=9)                           cGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAgaagaa                                                                          <  1:3872664/101‑1 (MQ=18)                            ggAGAGCCGCGTGCCAAGCGGGGTTTCGCCGGGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGaaa                                                                         <  1:2921000/101‑1 (MQ=17)                            ggAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGaaa                                                                         <  2:759145/101‑1 (MQ=18)                            ggAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGaaa                                                                         <  2:3776171/101‑1 (MQ=18)                             gAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAAc                                                                        <  1:2126933/101‑1 (MQ=18)                             gAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAAc                                                                        <  2:163316/101‑1 (MQ=18)                                  ccGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCg                                                                   <  2:1785524/101‑1 (MQ=18)                                     cgTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGa                                                                <  2:3437024/101‑1 (MQ=18)                                      gTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAc                                                               <  2:2892352/101‑1 (MQ=18)                                       tGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAcc                                                              <  1:1954841/101‑1 (MQ=18)                                         ccAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAg                                                            <  1:2690281/101‑1 (MQ=18)                                          cAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAgg                                                           <  2:2133135/101‑1 (MQ=18)                                           aaGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGc                                                          <  2:2256366/101‑1 (MQ=18)                                            aGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGcc                                                         <  1:3210292/101‑1 (MQ=18)                                                gggTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCTGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGcccccc                                                     <  2:3061714/101‑1 (MQ=18)                                                  gTTTCGCCGCGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTg                                                   <  1:3254114/101‑1 (MQ=18)                                                      cgccgcGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGc                                               <  2:2680733/101‑1 (MQ=18)                                                        ccgcGGCGGGGCCGCGGCGTG.CCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCg                                             <  1:2523589/101‑1 (MQ=21)                                                        ccgcGGCGGGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCg                                             <  1:428965/101‑1 (MQ=18)                                                           cggcggGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCAt                                          <  2:2857051/101‑1 (MQ=18)                                                            ggcggGGCCGCGGCG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATg                                         <  1:2528192/101‑1 (MQ=18)                                                                                         ggggctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGc                 >  1:3122338/9‑101 (MQ=255)                                                                                           ggctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGccc               >  1:382794/7‑101 (MQ=255)                                                                                            gctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGcccc              <  2:524084/96‑1 (MQ=255)                                                                                            gctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGcccc              >  2:3066972/6‑101 (MQ=255)                                                                                            gctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGcccc              >  1:2155091/6‑101 (MQ=255)                                                                                             ctccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCg             <  1:3585227/97‑1 (MQ=255)                                                                                              tccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGc            >  1:660794/4‑101 (MQ=255)                                                                                              tccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGc            >  1:1699217/4‑101 (MQ=255)                                                                                               ccgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCt           <  2:3201783/99‑1 (MQ=255)                                                                                                cgCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCtt          <  1:616342/100‑1 (MQ=255)                                                                                                  cccccGCCCCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCtttt        <  1:1580349/101‑1 (MQ=255)                                                                                                  cccccGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCtttt        >  2:936086/1‑101 (MQ=255)                                                                                                  cccccGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCtttt        <  1:4169998/101‑1 (MQ=255)                                                                                                   ccccGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTc       >  2:3316814/1‑101 (MQ=255)                                                                                                    cccGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTcc      <  1:746901/101‑1 (MQ=255)                                                                                                    cccGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTcc      <  2:382743/101‑1 (MQ=255)                                                                                                     ccGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCt     <  1:1792321/101‑1 (MQ=255)                                                                                                      cGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTa    >  1:1429943/1‑101 (MQ=255)                                                                                                      cGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTa    >  1:437939/1‑101 (MQ=255)                                                                                                       gCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAg   >  2:3369470/1‑101 (MQ=255)                                                                                                       gCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAg   <  1:2313753/101‑1 (MQ=255)                                                                                                       gCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAg   >  2:2683467/1‑101 (MQ=255)                                                                                                        cACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGACCCGCTTTTCCTAgg  >  2:3260862/1‑101 (MQ=255)                                                                                                        |                                                                                                     GAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGCGGCG.A.CCGGGC..GGGCGG..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATGCCGTCCGCGTCAACAGGCAAGGGCCCCGCTTTTCCTAGG  >  NC_014034/1732622‑1732817 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 26 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG