New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	900803 =	45 (0.220)	33 (0.160)	12/194	23.8	0.42	intergenic (‑132/‑155)	ldh/ftsW	L‑lactate dehydrogenase/cell division protein FtsW
	?	NC_014034	= 2995638	48 (0.230)					intergenic (+178/+42)	RCAP_rcc02802/RCAP_rcc02803	membrane dipeptidase/hypothetical protein
Rejected: Position hash score below cutoff.

CCAAGGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGA  >  NC_014034/2995539‑2995738                                                                                                     |                                                                                                        ccAAGGAAACCCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGccc                                                                                                        <  2:1882955/101‑1 (MQ=255) ccAAGGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGccc                                                                                                        <  2:2332391/101‑1 (MQ=255)   aaGGAAACCCCCTTCGTTTGCCGCCCCGCACCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGAAAAATACG.CCGGGGGGTGCGGGGGGCGGAGccccc                                                                                                      <  2:1510146/101‑1 (MQ=25)          aCCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.Cgggc                                                                                              >  1:2832347/1‑100 (MQ=255)              cTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGcc                                                                                          >  1:2252209/1‑101 (MQ=255)               ttgggTTGCCGCCCCGCACCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CGGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGccc                                                                                         <  2:586805/98‑1 (MQ=255)                              gCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCCGGGCg                                                                        >  1:94853/1‑101 (MQ=255)                               cAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCggggggg                                                                       >  1:4006701/1‑98 (MQ=255)                                aaCCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGaa                                                                      >  1:3498010/1‑101 (MQ=255)                                     gTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATccc                                                                 >  1:3112198/1‑101 (MQ=255)                                       cggcggCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGGAATccccc                                                               >  2:1978130/1‑101 (MQ=255)                                                 gcgcCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTccc                                                     >  2:432538/1‑101 (MQ=255)                                                      ttgtttttCCTTGGAAAAATACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttc                                                   >  2:1285997/5‑98 (MQ=0)                                                          ttttCCTTGGAAAAATACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcatct                                               >  2:4195359/1‑94 (MQ=2)                                                            ttCCTTGGAAAAATACGCCCGGGGGGTGCGGGGGGCGGAGCCCCCCGCCGGGTCGCCTCGGCGTCAGCCGAGGCGAAATACCCC.CTCAGCccttcatcttg                                             >  1:3319971/1‑92 (MQ=0)                                                             tCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGa                                         >  1:1538854/1‑101 (MQ=255)                                                                ttGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCt                                      >  1:3327980/1‑101 (MQ=255)                                                                      aaaatcccgcGGGGGGTTGGGGGGGCGGCCCCCCCCG.GGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAAc                                 <  2:2242409/92‑1 (MQ=255)                                                                                 gggggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..TCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGCCAGAcg                      >  1:3500114/1‑101 (MQ=255)                                                                                 gggggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCCCAGTCCCACAGACTTTCGACCCCGAACCCGGGCCGAcg                      >  1:2880052/1‑101 (MQ=37)                                                                                   gggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGAcgcg                    >  2:3208128/1‑101 (MQ=255)                                                                                    ggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCCGGTCAGAcgccg                   >  1:1845/1‑99 (MQ=255)                                                                                    ggTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCCGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGCCCTCGAACCGGGTCAGACGCgg                   >  1:1341200/1‑101 (MQ=255)                                                                                    ggTGCGCGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGACGGgg                   >  2:122288/1‑101 (MQ=255)                                                                                     gTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGa                  >  2:2393342/1‑101 (MQ=255)                                                                                      tGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGag                 >  2:487477/1‑100 (MQ=255)                                                                                      tGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGAt                 >  1:738041/1‑101 (MQ=255)                                                                                         ggggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGGTgcg              >  2:2348761/1‑101 (MQ=255)                                                                                          tctggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcgc             <  2:173741/98‑1 (MQ=255)                                                                                          gggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcgc             >  2:3238310/1‑101 (MQ=255)                                                                                          gggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcgc             >  1:266601/1‑101 (MQ=255)                                                                                           gggggggccccccccG.CGGGTCGCCCCGGCTT..GCCGGTGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCa            <  1:622405/92‑1 (MQ=39)                                                                                           ggggCGGAGCCCCCCG.CGGGTGGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCa            >  1:2410128/1‑101 (MQ=255)                                                                                           ggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATgcgcc            >  2:1454700/1‑100 (MQ=255)                                                                                           ggggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGGCAGACGCGGATGCGCa            >  1:2978527/1‑101 (MQ=255)                                                                                            gggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAg           >  1:1990706/1‑101 (MQ=255)                                                                                             ggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAgg          >  2:3759665/1‑101 (MQ=255)                                                                                             ggCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAga          >  1:173779/1‑100 (MQ=255)                                                                                             ggCCGAGCCCCCCG.CGGGGCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGGCCCAGACATTTCTGACCCCTAACCGGGCTGGACCCGGATGGGCCgg          >  2:4122086/1‑101 (MQ=255)                                                                                               cGGAGCCCCCCG.CGGGTCGCCCCGGCTT..CCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCTACCTCGAACCGGGCCAGACGCGGATGCGCACGCg        >  2:1085213/1‑101 (MQ=39)                                                                                                ggAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCgg       >  2:4169143/1‑101 (MQ=255)                                                                                                ggAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCgg       >  1:3585038/1‑101 (MQ=255)                                                                                                 gAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCggg      >  2:688071/1‑101 (MQ=255)                                                                                                 gAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCggg      >  1:3963514/1‑101 (MQ=255)                                                                                                  aGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGc     <  1:4230058/101‑1 (MQ=255)                                                                                                   gCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGcc    >  2:2848319/1‑101 (MQ=255)                                                                                                    ccccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGGCg   >  2:3940515/1‑101 (MQ=255)                                                                                                    ccccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCg   >  2:2225828/1‑101 (MQ=255)                                                                                                    ccccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCg   >  1:1644648/1‑101 (MQ=255)                                                                                                     cccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGa  >  1:3733842/1‑101 (MQ=255)                                                                                                     cccccG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCCCCCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGAGGGGGCGGCGGGCCGa  >  1:4098024/1‑101 (MQ=38)                                                                                                     |                                                                                                        CCAAGGAAAACCCCTTCGGTTGCCGCCCCGCAACCCGTCGGCGGCCCAGCGCCCTGCTTTTCCTTGGCAAAATACG.CCGGGGGGTGCGGGGGGCGGAGCCCCCCG.CGGGTCGCCCCGGCTT..GCCGGGGCGAAATCCCCCGCTCAGTCCCAGAGACTTTCGACCTCGAACCGGGTCAGACGCGGATGCGCAGGCGGGCCGA  >  NC_014034/2995539‑2995738 Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 39 ≤  ATCG