| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,696,179 | A→C | 7.8% | intergenic (‑107/+118) | RCAP_rcc01564 ← / ← mmsA | isobutyryl‑CoA dehydrogenase/methylmalonate‑semialdehyde dehydrogenase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,696,179 | 0 | A→C | 7.8% | 34.2 ‑0.8 ‑0.1 | 208 | intergenic (‑107/+118) | RCAP_rcc01564/mmsA | isobutyryl‑CoA dehydrogenase/methylmalonate‑semialdehyde dehydrogenase |
| Reads supporting (aligned to +/- strand): new base (9/8): ref base (78/113): total (87/121) | ||||||||||
| Fisher's exact test strand distribution p-value = 4.42e-01 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 8.57e-01 | ||||||||||
Only 100 of 214 total aligned reads displayed.
CCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAAGGGCAGCTTGCCCCTCATGGCCTTTC.GG.CAATTCCA.CCCGGGAAGGTTGGGCCAAAGGGTGAAACCACCCTGGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGCCC > NC_014034/1696082‑1696283
|
ccAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTc < 2:2210227/101‑1 (MQ=255)
cAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTca > 2:677068/1‑100 (MQ=255)
cAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTca > 2:3929199/1‑100 (MQ=255)
aaaGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTcac < 1:733058/101‑3 (MQ=255)
aaGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GG.CCAATTCA.cc < 2:3590879/101‑1 (MQ=255)
aGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GG.CCAATTCA.ccc > 2:926325/1‑101 (MQ=255)
gTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GG.CCAATTCA.cccc > 2:2670416/1‑100 (MQ=255)
tGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GG.CCAATTCA.ccccg > 2:4059117/1‑99 (MQ=255)
gCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GG.CCAATTCA.CCCcgg > 2:2048056/1‑101 (MQ=37)
cTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCTCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGa > 2:1236542/1‑101 (MQ=255)
cTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGa > 2:641394/1‑101 (MQ=255)
tGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGat < 1:1676892/101‑2 (MQ=255)
gAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGatg < 1:3067310/101‑3 (MQ=25)
aaTTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGatgt < 2:782878/101‑4 (MQ=255)
aaTTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGatgt > 1:2305139/1‑98 (MQ=255)
ttGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGatgttt < 2:2924136/101‑6 (MQ=25)
tGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGTGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCGC.CCCGGGATGTTTg < 1:838781/101‑1 (MQ=255)
tGAACGTCTGTTTAATTTCGAATCCTAGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTg < 1:1858763/101‑1 (MQ=255)
aaCGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCCATTCAC.CCCGGGATGTTTggg > 1:154355/1‑101 (MQ=255)
aCGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGc < 1:3211974/101‑1 (MQ=255)
cGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGcc < 1:4059378/101‑1 (MQ=255)
cGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGcc > 2:413712/1‑101 (MQ=25)
tCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCaa > 2:2330463/1‑101 (MQ=255)
tGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCaagg > 1:112763/1‑99 (MQ=255)
gTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCaaggt < 1:4232443/101‑4 (MQ=255)
gTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAAGgg > 1:3860893/1‑101 (MQ=255)
ttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCaaggtga < 1:4081391/101‑6 (MQ=16)
ttAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.CGCCCCTCCTGGCCTTTC.GGCCAATTAAC.CCCGGGATTTTTGGGCCAAGggga > 1:356887/1‑100 (MQ=255)
tAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCaaggtgaa > 1:3470800/1‑95 (MQ=255)
aaTTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCaaggtgaaa < 1:4008949/101‑8 (MQ=255)
aaTTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCaaggtgaaa < 1:4101421/101‑8 (MQ=255)
ttCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacac > 1:3243274/1‑99 (MQ=12)
ttCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacac > 2:1742628/1‑99 (MQ=12)
cGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGTGCCAA..GGTGAAacacct > 1:1706762/1‑97 (MQ=255)
cGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAAGgggaaacacct > 1:65759/1‑93 (MQ=255)
gAATCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacacctt < 1:926410/101‑6 (MQ=255)
aaTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttg < 1:457876/101‑7 (MQ=12)
aaTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttg < 1:1311932/101‑7 (MQ=12)
aaTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttg < 2:1964853/101‑7 (MQ=12)
aaTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttg < 2:3495203/101‑7 (MQ=12)
aTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttgc > 1:2229965/1‑94 (MQ=255)
aTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttgc < 2:1296326/101‑8 (MQ=255)
aTCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttgc > 2:3054120/1‑94 (MQ=255)
tCCTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttgct < 2:2154012/101‑9 (MQ=255)
ccTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttgctt < 1:3498769/101‑10 (MQ=9)
cTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttgcttt < 1:3728606/101‑11 (MQ=255)
cTTGCACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAacaccttgcttt > 1:2091301/1‑91 (MQ=255)
cACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCt > 2:3313167/1‑101 (MQ=9)
cACGAATTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCt < 2:2532239/101‑1 (MQ=255)
aaTTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCACTTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTggg > 1:2325921/1‑100 (MQ=255)
aaTTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGgc < 1:3182710/101‑1 (MQ=9)
aaTTTTGCAAGGAGGGGAGAGGGGC.GC.TGCCCCCCCCGGCCTTTCTGC.CAATTCAC.CCCCGGATGTTTGGGCCCA..GGTGGAA.CA.CCTTGCTTTTTCTTGgc > 2:809034/1‑101 (MQ=255)
ttttGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGgcgc > 1:2593942/1‑101 (MQ=9)
ttGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTTGCGCaa > 1:3840992/1‑101 (MQ=255)
ttGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCaa > 1:2793385/1‑101 (MQ=255)
tGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCaaa < 2:4000554/101‑1 (MQ=255)
tGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCaaa < 2:3720736/101‑1 (MQ=255)
tGCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCaaa > 2:51160/1‑101 (MQ=9)
gCAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAAt < 2:2011600/101‑1 (MQ=9)
cAAGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATa < 1:1735552/101‑1 (MQ=255)
aaGGAGGGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATAc < 2:236406/101‑1 (MQ=255)
aggaggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACg < 2:3685589/101‑1 (MQ=9)
aggaggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACg > 1:3660745/1‑101 (MQ=255)
ggaggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGc > 1:595900/1‑101 (MQ=255)
gaggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGcc > 1:447266/1‑101 (MQ=9)
gagcGGAGAGGGGC.GC.TGCTCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGCGATGTTTGGGCCAA..GGTTAAAC..CCCTTGCTTTTTCTTGGCGCAAATACGcc < 1:4166880/101‑1 (MQ=9)
aggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGTCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCct > 2:1387883/1‑101 (MQ=12)
aggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCct > 2:4073574/1‑101 (MQ=12)
aggGGAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCct < 2:17495/101‑1 (MQ=9)
gggAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCctct > 1:150170/1‑101 (MQ=9)
gggAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCctct < 2:3104716/101‑1 (MQ=12)
gggAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCctct < 1:214203/101‑1 (MQ=255)
gggAGAGGGGC.GC.TGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCctct < 2:549700/101‑1 (MQ=255)
gaggggcgctGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTTGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTTGGGCAAATACGCCTCTGGcc > 1:3758137/10‑101 (MQ=255)
ggcgctGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGaa > 1:1084837/6‑101 (MQ=16)
gcgctGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAg < 1:1361192/97‑1 (MQ=255)
cgctGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAgg < 2:1723791/98‑1 (MQ=16)
gctGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAggg > 1:2482379/3‑101 (MQ=19)
gctGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAggg < 1:2434553/99‑1 (MQ=255)
ctGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGc > 2:2870644/2‑101 (MQ=16)
tGCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCa < 2:3226963/101‑1 (MQ=16)
gCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCaa > 2:162784/1‑101 (MQ=19)
gCCCCTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCaa < 2:3342690/101‑1 (MQ=255)
ccccTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGCAGGGCAAg > 2:1692870/1‑101 (MQ=16)
ccccTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAg > 1:1000892/1‑101 (MQ=19)
ccccTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAg > 2:2977780/1‑101 (MQ=19)
cTCCTGGCCTTTC.GGCCAATTCCC.CCCGGGATGTTTGGGCCAA..GGTGAAAC..CCCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCcg < 1:2978002/101‑1 (MQ=21)
cTCCTGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCcg < 1:1186680/101‑1 (MQ=255)
tGGCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGcc < 1:2387071/101‑1 (MQ=19)
ggCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCg > 2:1057942/1‑101 (MQ=255)
ggCCTTTC.GGCCAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAAGACGCCTCTGGCCCGAAGGGCAAGCCGCGCCg < 1:3800518/101‑1 (MQ=255)
ggCCTTTC.GG.CCAATCCACCCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCg < 2:2414690/101‑1 (MQ=19)
cggccAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGgcgc > 2:2594750/5‑101 (MQ=255)
ggccAATTCCC.CCCGGGATGTTTGGGCCAA..GGTGAAAC..CCCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGcgcg < 1:3704033/98‑1 (MQ=25)
gccAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCgg < 2:3840733/99‑1 (MQ=25)
ccAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CACCTT.GCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGc > 1:2693596/2‑101 (MQ=25)
cAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCTGCGCCGAAGGCGCGGcc > 1:2508434/1‑101 (MQ=25)
cAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGcc < 2:2185880/101‑1 (MQ=25)
cAATTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGcc > 2:1878215/1‑101 (MQ=255)
aaTTCAC.CCCGGGATGTTTGGGCCAA..GGTGAAA.CA.CCTTGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGccc > 2:855119/1‑101 (MQ=255)
|
CCAAAGTGCCTGAATTGAACGTCTGTTTAATTTCGAATCCTTGCACGAATTTTGCAAGGAGGGGAGAAGGGCAGCTTGCCCCTCATGGCCTTTC.GG.CAATTCCA.CCCGGGAAGGTTGGGCCAAAGGGTGAAACCACCCTGGCTTTTTCTTGGCGCAAATACGCCTCTGGCCCGAAGGGCAAGCCGCGCCGAAGGCGCGGCCC > NC_014034/1696082‑1696283
Base quality scores:
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 41 ≤
ATCG
|