| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 3,068,163 | A→T | 4.2% | intergenic (‑146/+146) | glcD ← / ← RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 3,068,163 | 0 | A→T | 4.2% | 10.3 ‑2.5 ‑0.6 | 144 | intergenic (‑146/+146) | glcD/RCAP_rcc02872 | glycolate dehydrogenase, subunit GlcD/hypothetical protein |
| Reads supporting (aligned to +/- strand): new base (6/0): ref base (85/53): total (91/53) | ||||||||||
| Fisher's exact test strand distribution p-value = 8.53e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 2.63e-01 | ||||||||||
Only 100 of 192 total aligned reads displayed.
ATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGG > NC_014034/3068063‑3068262
|
cgatctgcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCa < 1:3147919/95‑1 (MQ=255)
aTTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCa < 2:2809970/101‑1 (MQ=255)
ttCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAg < 2:1059084/101‑1 (MQ=255)
tCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCCAGGGCCCAAA.GG.CCCCC.CGCCaag > 2:492982/1‑99 (MQ=255)
gcgcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAgcgc < 1:3744611/101‑1 (MQ=255)
gcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGcgccc < 2:3888733/101‑1 (MQ=255)
gcAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGcgccc > 2:3192958/1‑101 (MQ=255)
aaCCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGcgcccgc > 1:567069/1‑101 (MQ=255)
ccGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCgcccgccc < 2:2020584/101‑1 (MQ=255)
gAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGcccgccccg < 2:536416/101‑1 (MQ=255)
gAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGcccgccccg > 2:3696025/1‑101 (MQ=255)
gAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGcccgccccg > 2:2665269/1‑101 (MQ=255)
gAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGcccgccccg < 1:371243/101‑1 (MQ=255)
cggtGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCa < 2:1064825/98‑1 (MQ=255)
cGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCa < 1:2671236/101‑1 (MQ=255)
cGATGGGCAGGCGGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCa < 2:2030896/101‑1 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCAt < 1:1533616/101‑1 (MQ=255)
gATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCAt > 1:1475925/1‑101 (MQ=255)
aggggCGGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATg < 1:1774654/99‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATg < 2:1111439/101‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATg < 1:1729808/101‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATg > 1:1793946/1‑101 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATg < 1:2300756/101‑1 (MQ=255)
aTGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATg < 1:1065946/101‑1 (MQ=255)
gggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATggc < 2:3984774/101‑1 (MQ=255)
ggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATggc.g > 2:3773314/1‑101 (MQ=255)
ggCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATggc.g > 1:1920046/1‑101 (MQ=255)
gCAGGCTGACCGAGGCCATCGCCCAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATggc.gg > 2:744042/1‑101 (MQ=255)
cAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATggc.ggg < 2:567005/101‑1 (MQ=255)
cAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATggc.ggg < 1:3509296/101‑1 (MQ=255)
aGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATggc.gggc > 2:1473617/1‑101 (MQ=255)
aGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATggc.gggc > 2:2784563/1‑101 (MQ=255)
ggCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATggc.ggggg > 1:1984297/1‑99 (MQ=255)
tGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCtt < 2:3120389/101‑1 (MQ=255)
tGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCACGGC.GGgggcgt > 2:2022118/1‑99 (MQ=255)
gACCGAGGCGATCGCCGAGGTCATGCGGACCAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTtc < 1:329548/101‑1 (MQ=255)
gACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTtc < 2:265709/101‑1 (MQ=255)
aCCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGGCCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGGGCCCGCCCCGCCCATGGC.GGGCGCTtct < 1:3999814/101‑1 (MQ=255)
aCCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTtct < 1:3868690/101‑1 (MQ=255)
ccGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTtctc > 1:904195/1‑101 (MQ=255)
cATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCCcgc.ccgcc > 1:4224809/1‑101 (MQ=255)
aTCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.ccgccg > 2:1928512/1‑101 (MQ=255)
aTCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.cccccg > 1:1336588/1‑101 (MQ=255)
aTCGCCGAGGTCAGGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.ccgccg < 1:45123/101‑1 (MQ=255)
cGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCg.gg < 1:4009409/101‑1 (MQ=255)
cGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCCC.CCGCCc.gg > 2:2306011/1‑101 (MQ=255)
gCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCCTGGC.GGGCGCTTCTCGC.CCCCCg.ggg > 2:3830834/1‑101 (MQ=255)
cGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.gggcg < 2:3419522/101‑1 (MQ=255)
cGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCCCCCATGGC.GGGCGCTTCGCCC.CCTGCg.ggggg > 1:758458/1‑99 (MQ=17)
gAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.gggcgg < 1:2595777/101‑1 (MQ=255)
aGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCCG.CCGCCC.gggcggg > 2:1599010/1‑101 (MQ=255)
gTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.Gggcgggcg < 2:2439155/101‑1 (MQ=255)
cATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGGGcc > 2:3126655/1‑101 (MQ=255)
cATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGcc > 1:669641/1‑101 (MQ=255)
cggCGGACCGGTGCCCCCGGGCCCGCCG.GGGCCCCAA.GG.CCCCCGGGCCAGCCCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCg < 1:1434531/99‑1 (MQ=11)
aTGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGGGCCg > 1:2382047/1‑101 (MQ=255)
gCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGG.CCGCCG.GGGGGGGCGCCgga > 2:1235606/1‑100 (MQ=255)
cgaaaCAGTGGTCCCATGACCCCCGAGTGCCCCAA.GG.CACTC.GGGCAGCGCCCGCCCCGCCCATGGC.GGGCGGTTCTCGC.CCCCCC.GGGGGGGGGGCGGcc > 2:444392/4‑101 (MQ=17)
cGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCCGcc > 2:1378869/1‑101 (MQ=255)
cGGAACAGTGCCCTCGTGACCGCCGAGGGCCGAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGcc < 1:3462105/101‑1 (MQ=255)
acgggggCCTCGGGCCCGCCGAGGCCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCT.GGGCGGGCGCCGGCCTctg < 2:2195308/96‑1 (MQ=14)
acatggcccccGTGCCCGCGGAGGGCCAAAA.GG.CCCTC.GGCCAGCCCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTctg < 2:898105/91‑1 (MQ=11)
aCAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGGGCCGGCCTctg > 2:1095190/1‑101 (MQ=255)
aCAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCCCCG.GGGCGGGGGCCGGCCCctg > 1:410385/1‑101 (MQ=255)
aCAATGGCCCCGTGACCGGCGAGGGCCCAAA.GG.CCCTC.GGCCTGCGCCCGCCCCGCCATCGGC.GGGGGC.GGGCGCGCCGCCG.GGGCGGGGGGCgggggcct > 1:1355827/1‑95 (MQ=17)
ggggCCTGGTGCCCGCCGGGGGCCCAAG.GC.CCCTC.GCCCGGCGCCCGCCCCGCCCAGGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTctgctg < 2:2882145/99‑1 (MQ=14)
tGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCtgctgc > 2:251806/1‑101 (MQ=255)
tGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCtgctgc > 1:4166988/1‑101 (MQ=255)
gCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTgcgc > 1:1203977/1‑101 (MQ=255)
cggggcccgccg.GGGCCCAAA.GGCCCCCC.GGCCGGCGCCCGCCCCGCCCATGGG.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTg < 1:2192267/95‑1 (MQ=11)
cgggcccgcggAGGCCCCAAG.GG.CCCTC.GGCCGGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTgg < 2:4166726/96‑1 (MQ=14)
cGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCCCCG.GGGGGGGGGCCGGCCTCTGCTGCGCCTgg > 2:2699520/1‑101 (MQ=255)
gTGACCGCCGGGGGCCCAAA.GG.CCCTC.GGCCTGCGCCCGCCCCGCCATCGGCGGGGGGCTTCGCG..CCGCCGCGGGCGGGGGGCGGCCGCCGCGgcgggtgg > 2:3553242/1‑96 (MQ=2)
gTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCC.GGGCGGGGGCCCGCCCCTGCTGCGCCCggg > 1:1102957/1‑101 (MQ=14)
tGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCCCCG.GGGCGGGCGCCCGCCTCCGCTGCCCCCgggg > 2:3334407/1‑101 (MQ=14)
gcccgccgAGGCCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGa < 2:2823097/99‑1 (MQ=255)
cccgccg.GGGCCCAAA.GG.CCCCC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTTTCCC.CCCCCG.GGGCGGGCGCCGGGCGCTGGTCCGCCTgcgggcg > 2:4145598/2‑98 (MQ=11)
cccccccggggCCCAAAGGG.CCCTC.GCCCAGCCCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGa < 1:1167614/93‑1 (MQ=14)
ccgcggGGGCCCCAAG.GC.CCCTG.GGCCCGCCCCCGCCCCGCCCATGGC.GGGCGCTTCTCCC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGaaa < 1:2903314/101‑1 (MQ=14)
ccgccgGGGGCCCAAA.GG.CCCCC.GGCCAGGCCCCGCCCCGCCCATGGC.GGGCCCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGaaa < 1:2784782/101‑1 (MQ=14)
ccgcgggggCCCAAA.GGCCCCCC.GCCCCGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGaaa < 1:2271384/95‑1 (MQ=14)
ccgGGGCCCCAAG.GG.CCCTC.GGCCGGCCCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCGG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACgg < 2:1582821/101‑1 (MQ=17)
cgAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCCGCGCCCGGGGGAACggg > 1:1092423/1‑100 (MQ=255)
cgAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATAGC.GGGAGCTTCTCGC.CCGCCC.GGGCGGGGGCCGGGCCCTGCCCCGCCAGGGGAAACGGt > 1:1255514/1‑101 (MQ=14)
gAGGGCCCAAA.GG.CCCTC.GGCGAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGGNCCCGCCTCTGCTGCGGCTGGGGGAACgggc > 1:2410580/1‑99 (MQ=14)
gAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCCCTGCTGCGCCCGGGGGAACgggc > 1:2987262/1‑99 (MQ=255)
gaggCCCAAA.GGCCCCTC.GGCCGGCCCCCGNCCCGCCCAGGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTc < 1:195563/99‑1 (MQ=17)
gaggCCCAAA.GG.CCCCCGGGCCGGCCCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTc < 2:2545566/99‑1 (MQ=17)
aGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGGAACGGGCt > 1:2505581/1‑101 (MQ=255)
gggCCCCAA.GGCCCCCC.GGCCGGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCt < 1:2367967/101‑1 (MQ=17)
gccccAAA.GC.CCCTC.GGCCGGCCCCCCCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCCGCTGCGCCTGGGGAAACGGTCTTg < 1:3696279/99‑1 (MQ=18)
aaa.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGGGCCGGCCCCGGCTGCGCCTGGGGGAACGGGCTTGGCagc > 1:983699/1‑99 (MQ=17)
aa.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCg > 2:1867920/1‑101 (MQ=255)
aa.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCCC.CCGCCC.GGGCGGGGGGCCGCCTCTGCTGCGGCTTGGGGAACGGGCTTGGCACCg > 2:3871726/1‑101 (MQ=17)
g.CCCTC.GCCCAGCCCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGccc < 2:2146985/101‑1 (MQ=255)
c.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGGGCCGGCCCCCGCTGCGCCTGGGGGAACGGGCTTGGCACCGCCCGGGcc > 1:2878136/1‑100 (MQ=18)
ggCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGGAACGGTCTTGGCACCGCCCGGGCTc > 1:2390801/1‑101 (MQ=255)
ggCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTc > 2:3260323/1‑101 (MQ=255)
ccAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCcg > 2:2418916/1‑101 (MQ=255)
ccAGCGCCCCCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCGG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCcg < 2:1355698/101‑1 (MQ=255)
|
ATTCGCGCAACCGAAACGATGGGCAGGCTGACCGAGGCCATCGCCGAGGTCATGCGGAACAGTGGCCTCGTGACCGCCGAGGGCCCAAA.GG.CCCTC.GGCCAGCGCCCGCCCCGCCCATGGC.GGGCGCTTCTCGC.CCGCCG.GGGCGGGCGCCGGCCTCTGCTGCGCCTGGGGAAACGGTCTTGGCACCGCCCGGGCTCCGG > NC_014034/3068063‑3068262
Base quality scores:
ATCG
< 3 ≤
ATCG
< 15 ≤
ATCG
< 22 ≤
ATCG
< 31 ≤
ATCG
< 40 ≤
ATCG
|