| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 1,732,696 | +C | 94.3% | intergenic (‑120/‑283) | RCAP_rcc01601 ← / → tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 1,732,696 | 1 | .→C | 94.3% | 3.7 0.0 ‑0.1 | 53 | intergenic (‑120/‑283) | RCAP_rcc01601/tgt | FeS assembly SUF system protein/queuine tRNA‑ribosyltransferase |
| Reads supporting (aligned to +/- strand): new base (6/44): ref base (0/3): total (6/47) | ||||||||||
| Fisher's exact test strand distribution p-value = 1.00e+00 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 7.97e-01 | ||||||||||
CTAGAGTTTATATAGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.CCGGGC..GGGCGG..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATG > NC_014034/1732596‑1732778
|
cTAGAGTTTATATAGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCCC.GG.CG.a > 2:3289220/1‑101 (MQ=255)
gagTTTATATAGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.ccc < 1:496254/101‑2 (MQ=255)
agTTTATATAGGGTATCGGGGGGCGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCCTGCCAAGCAGGGCTTCGCCGCGGCGGGGCCGC.GG.CG.aaccg > 2:1349825/1‑97 (MQ=255)
agTTTATATAGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.cccg > 2:331700/1‑99 (MQ=255)
gTTTATATAGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.Cccgg < 2:3503900/101‑1 (MQ=255)
tttATATAGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGGCGC.GG.CG.A.ccccgg > 2:4121300/1‑97 (MQ=255)
ttATATAGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.Cccgggc < 1:2132761/101‑3 (MQ=255)
tatataGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..g > 2:3693152/1‑101 (MQ=255)
tataGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..ggg < 1:3327517/101‑1 (MQ=255)
tataGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.cccgg...gggcg > 1:1077418/1‑101 (MQ=255)
ataTGGTATAGGAGGGATAGGTAAAGGCCGTCGGTGCGGGGCGGAGAGCCGCGTTCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.AG.ACCcgggc..gggg < 2:3624362/101‑2 (MQ=255)
ataGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGGGGGGGGGCCGC.GG.CG.G.ccccggggggg > 1:1111452/1‑92 (MQ=255)
ataGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..gggg > 2:673887/1‑100 (MQ=255)
ataGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..gggg < 1:244695/101‑2 (MQ=255)
ataGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..gggg < 2:4265780/101‑2 (MQ=255)
ataGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CC.A.Cccggggcggg > 1:1190021/1‑95 (MQ=255)
ataGGGTATCGGGGGGAGAGGCAAAGGCCGTCGGTGCGGGGCGGAAACCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.ccccgtggggg > 2:2161596/1‑92 (MQ=255)
taGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGGCGC.GG.CG.G.Cccggggccggg > 2:930105/1‑94 (MQ=255)
gggTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..gggggct < 1:217549/101‑5 (MQ=255)
ggTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAGGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..gggggctc < 2:2742811/101‑6 (MQ=255)
gTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..gggggctcc < 2:4083487/101‑7 (MQ=255)
gTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..gggggctcc < 1:3203335/101‑7 (MQ=255)
gTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..gggggctcc < 2:2487314/101‑7 (MQ=255)
tATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGGCGCGGG.GG.C.CCCGGC..GGGGgg..g..ggg > 2:1651099/1‑99 (MQ=255)
aTCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGC..CGGGgg..g..gggc > 2:4325521/1‑98 (MQ=255)
tCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..gggggctccgcc < 1:2091978/101‑10 (MQ=38)
gcGGGGGGAGAGGTAAAGGCCGTCGGGGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..gggggctccgcc < 2:3858938/100‑10 (MQ=38)
cGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCcgggc..gggggctccgccc < 2:76431/101‑11 (MQ=38)
gggggAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.cccgg...gggcgg..gcgggggcgcg > 2:76043/1‑91 (MQ=255)
ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCAccccc < 1:711268/101‑1 (MQ=25)
ggTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCAccccc < 2:2075254/101‑1 (MQ=25)
aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGc < 2:1973429/101‑1 (MQ=25)
aaaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGc < 2:1150798/101‑1 (MQ=25)
aacgCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGC..GGGGGG..G..CCGCCCCCCccccccccacc > 2:2993324/4‑95 (MQ=255)
aaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCg < 1:1001759/101‑1 (MQ=25)
aaGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCg < 1:187209/101‑1 (MQ=25)
atctgTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTa < 2:3350387/97‑1 (MQ=21)
gCCGTCGGTGCGGGGCGGAAAGCGGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTAt < 1:1614284/101‑1 (MQ=21)
gCCGTCAGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTAt < 1:770119/101‑1 (MQ=21)
tCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTgc < 2:3544459/101‑1 (MQ=21)
tCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTgc < 2:1664309/101‑1 (MQ=21)
cGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaag < 2:2079693/101‑1 (MQ=21)
cGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaag < 1:3009094/101‑1 (MQ=21)
cGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaag < 1:1035101/101‑1 (MQ=21)
ggCGGAATGCCGGGTGCCAAGCAGTGTGTCGCTTCGGCGGGTCCGC.GG.CGCC.CCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCaagaag < 2:3965149/101‑1 (MQ=9)
ggAAAGCGGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGaaa < 1:2146661/101‑1 (MQ=18)
aaaGCCGCGTGCCAAGCAGGCTTGCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGTGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACa < 2:3652841/101‑1 (MQ=18)
aaGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACaa < 1:2602226/101‑1 (MQ=18)
aGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAg < 1:930185/101‑1 (MQ=18)
cgggCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGa < 1:4327914/98‑1 (MQ=18)
gTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGG..GGGGGG..GCCGCCCCCCCCCCCCCCGCGGATTTGGGGCCAGAAAAAACAAACggggc > 2:2228715/1‑99 (MQ=255)
tGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAcc < 2:3612074/101‑1 (MQ=18)
tGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGAcc < 1:3693427/101‑1 (MQ=18)
ccAAGCAGGGTTTCGCTGCGGCGGGGCGGC.GGAAG.C.ACGAGC..GGGGAGTAC..GCCACCGAACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAg < 2:2927147/101‑1 (MQ=12)
cAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGcccc < 1:4410554/101‑1 (MQ=18)
ggTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCt < 2:840507/101‑1 (MQ=18)
gTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTg < 1:4121586/101‑1 (MQ=18)
gTTTCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTg < 2:40717/101‑1 (MQ=18)
tCGCCGCGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAg < 2:4664067/101‑1 (MQ=18)
gccgcGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGcc < 1:673949/101‑1 (MQ=18)
gccgcGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGcc < 1:3223963/101‑1 (MQ=18)
ccgcGGCGGGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCg < 1:619161/101‑1 (MQ=18)
cgcgGCGGGGCCGC.GG.CG.ACCCGGGC..GGGGGGTCC..GCCCCCCCACCCCCCGCGTATTTGCGCCAAGAAGAAACAAGCGGGGGCAAGCCCCCCCGCCGCCGc > 2:3070030/1‑101 (MQ=19)
cggcggGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCac < 2:2915139/101‑2 (MQ=18)
cggcggGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCAt < 1:4251077/101‑1 (MQ=18)
ggcggGGCCGC.GG.CG.ACCCGGGCGGGGGCTC..C..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATg < 1:3502259/101‑1 (MQ=18)
|
CTAGAGTTTATATAGGGTATCGGGGGGAGAGGTAAAGGCCGTCGGTGCGGGGCGGAAAGCCGCGTGCCAAGCAGGGTTTCGCCGCGGCGGGGCCGC.GG.CG.A.CCGGGC..GGGCGG..G..GCCCCCGCACCCCCGGCGTATTTGCGCCAAGAAGAAACAAGCGGGACCAGGCCCCCCTGCAGCCGCATG > NC_014034/1732596‑1732778
Base quality scores:
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 24 ≤
ATCG
< 33 ≤
ATCG
< 38 ≤
ATCG
|