| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_014034 | 2,566,557 | +C | 97.2% | intergenic (+29/+165) | purD → / ← sdaA | phosphoribosylamine‑‑glycine ligase/L‑serine ammonia‑lyase |
| Read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_014034 | 2,566,557 | 2 | .→C | 97.2% | 5.1 ‑2.7 ‑0.2 | 143 | intergenic (+29/+165) | purD/sdaA | phosphoribosylamine‑‑glycine ligase/L‑serine ammonia‑lyase |
| Reads supporting (aligned to +/- strand): new base (37/102): ref base (3/1): total (40/103) | ||||||||||
| Fisher's exact test strand distribution p-value = 6.64e-02 | ||||||||||
| Kolmogorov-Smirnov test that lower quality scores support polymorphism than reference p-value = 6.71e-01 | ||||||||||
Only 100 of 168 total aligned reads displayed.
ATGCGATGGTCGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAAC.GGGG.GCGCTGCCCCC.CTC.CT..G..CTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTGCCCGAAATATCCCGGGGGAGCC > NC_014034/2566458‑2566644
|
aTGCGATGGTCGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..g < 1:628652/101‑1 (MQ=255)
aTGCGATGGTCGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..g < 2:4014949/101‑1 (MQ=255)
tGCGATGGTCGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..gg < 1:1286644/101‑2 (MQ=255)
gCGATGGTCGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..ggc < 1:1394923/101‑3 (MQ=255)
gATGGTCGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..ggcct < 1:4143399/101‑5 (MQ=39)
gATGGTCGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..ggcct < 1:3895620/101‑5 (MQ=39)
tGGTCGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..ggccttc < 1:966156/101‑7 (MQ=38)
gTCGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..ggccttcgg < 1:2903263/101‑9 (MQ=38)
tCGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..ggccttcggc > 2:1480413/1‑92 (MQ=37)
cGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGcc < 2:2103579/101‑1 (MQ=37)
cGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGcc < 1:4189647/101‑1 (MQ=37)
gATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCa < 2:373762/101‑1 (MQ=37)
aTGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTAGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCaa < 1:3924085/101‑1 (MQ=25)
gCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAAtt < 2:2292218/101‑1 (MQ=37)
cGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTc < 1:3216613/101‑1 (MQ=37)
gATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCa < 2:2878599/101‑1 (MQ=37)
gATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCa < 1:2629475/101‑1 (MQ=37)
tCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.cc < 1:2179857/101‑1 (MQ=37)
gACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACGAAAAG.GGGG.GGGCTGCCCCC.CTC.TT..GGCCTTC.GGCCCATTCA.cccc > 2:1825213/1‑101 (MQ=25)
gACTGGCCCGAGAGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.CGCCCATTCC.cccc > 1:2529402/1‑101 (MQ=25)
aCTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.ccccc < 2:898937/101‑1 (MQ=25)
cTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.cccccc < 1:1662172/101‑1 (MQ=25)
tGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCg < 1:730590/101‑1 (MQ=25)
ggCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCgg < 2:3842005/101‑1 (MQ=25)
ggCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCgg < 1:52255/101‑1 (MQ=25)
ggCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCgg < 1:4585449/101‑1 (MQ=25)
gccGGGGGTTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.a < 2:2989507/100‑1 (MQ=21)
aGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATAtt < 1:2930665/101‑1 (MQ=21)
ggggTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATAttt < 1:634884/101‑1 (MQ=21)
gggTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATACTTc < 1:3591918/101‑1 (MQ=21)
ggTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGATACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCg < 1:2312179/101‑1 (MQ=21)
gTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCgg < 1:1572687/101‑1 (MQ=21)
gTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCCTC.TGCCCATTCA.CCCCCCCGG.AGATTTCgg > 2:501699/1‑101 (MQ=21)
ttCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCggg < 2:555777/101‑1 (MQ=21)
ttCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCggg > 1:2827380/1‑101 (MQ=21)
ttCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCCGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCCGG.AAATTTTggg > 2:4079914/1‑101 (MQ=21)
tCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACGAAAAG.GGGG.GCGCTGCCCCC.CCC.TT..GGCCTTT.GGCCAATTCA.CCCCCCCGG.AAATGTCGGGc > 2:2268209/1‑101 (MQ=18)
tCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGc < 2:2554543/101‑1 (MQ=21)
tCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGc < 1:1433966/101‑1 (MQ=21)
tCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGc < 1:3531817/101‑1 (MQ=21)
cTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TTTGG..CTTC.GGCCCATTCACCCCCCCGGGCAAATTTCggg > 2:3330359/1‑101 (MQ=21)
tGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACGAAAAG.GGGG.GGGCTGCCCCC.CTCTTT..G..CCTCTGGCCAATTCA.CCCCCCCGG.GAATTTTCGGCaa > 1:3995048/1‑101 (MQ=16)
gccgccGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAg < 1:1027741/101‑1 (MQ=21)
gccgccGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAg < 1:4538410/101‑1 (MQ=21)
gccgccGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAg < 2:4245141/101‑1 (MQ=21)
cgccgcGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGAt < 2:4310610/101‑1 (MQ=21)
gccgcGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATa < 2:1969619/101‑1 (MQ=21)
gccgcGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATa < 2:4475018/101‑1 (MQ=21)
ccgcGACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATaa < 1:1149516/101‑1 (MQ=21)
cgACATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAaaga > 1:2809323/1‑101 (MQ=21)
aCATCGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAaagaag < 2:3109085/101‑1 (MQ=21)
cGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCt < 1:3690360/101‑1 (MQ=21)
cGGCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCt < 1:2317065/101‑1 (MQ=21)
ggCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCtt < 1:823683/101‑1 (MQ=21)
gCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCC.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCttt < 1:3311393/101‑1 (MQ=21)
gCTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCttt < 1:399936/101‑1 (MQ=21)
gCTGGCGCGCGCGCTGATACG.AAAC.GGGGTGCGCTCCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.TTATTTCGGGCAAGATAAAGAAGGTCttt < 2:776877/101‑1 (MQ=21)
cTGGCGCGCGCTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCtttt < 2:269921/101‑1 (MQ=21)
gcgcgcgcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCt < 2:2512811/101‑1 (MQ=21)
gcgcgcgcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCt < 1:3271464/101‑1 (MQ=21)
cgcgcgcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCC.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCtt < 1:1621234/101‑1 (MQ=21)
gcgcgcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCttt < 1:2863293/101‑1 (MQ=21)
cgcgcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGGTAAAGAAGGTCTTTTCCTTTc < 1:1909872/101‑1 (MQ=21)
cgcgcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTc < 2:927318/101‑1 (MQ=21)
cgcgcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTc < 1:4442676/101‑1 (MQ=21)
gcgcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCa < 2:355323/101‑1 (MQ=21)
gcgcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCa < 2:1107032/101‑1 (MQ=21)
gcgcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCa < 1:3657419/101‑1 (MQ=21)
gatctctGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCa < 1:949411/98‑1 (MQ=21)
cgcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCAt > 1:2541633/1‑101 (MQ=21)
gcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATc < 2:358972/101‑1 (MQ=21)
gcTCTGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATc < 2:3829338/101‑1 (MQ=21)
ctGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTg < 1:2426478/101‑1 (MQ=21)
ctGAGACG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTg < 1:3848187/101‑1 (MQ=21)
gaCG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTGCCCg < 1:206365/101‑1 (MQ=21)
aCG.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTGCCCGa > 1:3476249/1‑101 (MQ=21)
g.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTGCCCGaaa < 1:433325/101‑1 (MQ=21)
g.AAACGGGGG.GCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTGCCCGaaa < 1:4492940/101‑1 (MQ=21)
ggcagggg.gCGCTG.CCCC.CTC.TT..GGCCTTT.GGCCAATTCA..CCCCTGGG.ATATTTCGGGCAAGAT...GAA.ATCATGCCCCTTCATCTTGCCGCAAATATCCCgg > 1:4310023/5‑101 (MQ=0)
aacggggg.gCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTGCCCGAAata < 2:2855141/97‑1 (MQ=25)
gcagggg.gCGCTG.CCCC.CTC.TT..GGCCTTT.GGCCAATTCA..CCCCTGGG.ATATTTCGGGCAAGAT...GAA.ATCATGCCCCTTCATCTTGCCGCAAATATCCCggg > 1:1479095/4‑101 (MQ=0)
gcagggg.gCGCTG.CCCC.CTC.TT..GGCCTTT.GGCCAATTCA..CCCCTGGG.ATATTTCGGGCAAGAT...GAA.ATCATGCCCCTTCATCTTGCCGCAAATATCCCggg > 2:1564774/4‑101 (MQ=0)
acggggg.gCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGACTTTTTCTTTCATCTTTCCCGAAaaat > 1:266360/4‑101 (MQ=18)
ggggg.gCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTGCCCGAAATATcc < 2:3092070/100‑1 (MQ=25)
agggg.gCGCTGCCCCCTCTT.GG..C..CTTT.GGCCAATTCA..CCCCTGGG.ATATTTCGGGCAAGAT...GAA.ATCATGCCCCTTCATCTTGCCGCAAATATCCCggggg > 1:3136529/2‑101 (MQ=0)
agggg.gCGCTG.CCCC.CTC.TT..GGCCTTT.GGCCAATTCA..CCCCTGGG.ATATTTCGGGCAAGAT...GAA.ATCATGCCCCTTCATCTTGCCGCAAATATCCCggggg > 1:3636398/2‑101 (MQ=0)
agggg.gCGCTG.CCCC.CTC.TT..GGCCTTT.GGCCAATTCA..CCCCTGGG.ATATTTCGGGCAAGAT...GAA.ATCATGCCCCTTCATCTTGCCGCAAATATCCCggggg > 1:4097678/2‑101 (MQ=0)
agggg.gCGCTG.CCCC.CTC.TT..GGCCTTT.GGCCAATTCA..CCCCTGGG.ATATTTCGGGCAAGAT...GAA.ATCATGCCCCTTCATCTTGCCGCAAATATCCCggggg > 2:2229699/2‑101 (MQ=0)
agggg.gCGCTG.CCCC.CTC.TT..GGCCTTT.GGCCAATTCA..CCCCTGGG.ATATTTCGGGCAAGAT...GAA.ATCATGCCCCTTCATCCTGCCGCAAATATCCCggggg > 1:4292733/2‑101 (MQ=2)
gggg.gCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCC.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTGCCCGAAATATccc < 2:1496807/101‑1 (MQ=25)
ggg.gCGCTGCCCCCTCTT.GG..C..CTTT.GGCCAATTCA..CCCCTGGG.ATATTTCGGGCAAGAT...GAA.ATCATGCCCCTTCATCTTGCCGCAAATATCCCgggggga < 1:1280857/101‑3 (MQ=0)
ggg.gCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTGCCCGAAATATCCCg < 1:4310501/101‑1 (MQ=25)
gg.gCGCTGCCCCCTCTT.GG..C..CTTT.GGCCAATTCA..CCCCTGGG.ATATTTCGGGCAAGAT...GAA.ATCATGCCCCTTCATCTTGCCGCAAATATCCCggggggag > 2:453797/1‑98 (MQ=2)
gg.gCGCTG.CCCC.CTC.TT..GGCCTTT.GGCCAATTCA..CCCCTGGG.ATATTTCGGGCAAGAT...GAA.ATCATGCCCCTTCATCTTGCCGCAAATATCCCggggggag > 2:2606470/1‑98 (MQ=2)
gg.gCGCTG.CCCC.CTC.TT..GGCCTTT.GGCCAATTCA..CCCCTGGG.ATATTTCGGGCAAGAT...GAA.ATCATGCCCCTTCATCTTGCCGCAAATATCCCggggggag > 2:2471942/1‑98 (MQ=2)
g.gCGCTGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTGCCCGAAATATCCCggg < 1:1041361/101‑1 (MQ=37)
tGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTTGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTTCCCGAAATATCCCGGGGGAGc > 2:1791967/1‑101 (MQ=25)
tGCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTGCCCGAAATATCCCGGGGGAGc > 1:1858119/1‑101 (MQ=37)
gCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.GGATTTTGGGCCAGATAAAGAAGGGCTTTTTCTTTTATCTTTCCCGAAATATTCCGGGGGGGcc > 1:4652424/1‑101 (MQ=16)
gCCCCC.CTC.TT..GGCCTTC.GGCCAATTCA.CCCCCCGGG.AGATTTCGGGCCAGATAAAAAAGGGCTTTTTCTTTTATCTTTTCCGGAAAATCCCCGGGGGGcc > 2:1755715/1‑101 (MQ=12)
|
ATGCGATGGTCGATGCGATCGACTGGCCCGAGGGGTTCTGCCGCCGCGACATCGGCTGGCGCGCGCTCTGAGACG.AAAC.GGGG.GCGCTGCCCCC.CTC.CT..G..CTTC.GGCCAATTCA.CCCCCCGGG.ATATTTCGGGCAAGATAAAGAAGGTCTTTTCCTTTCATCTTGCCCGAAATATCCCGGGGGAGCC > NC_014034/2566458‑2566644
Base quality scores:
ATCG
< 3 ≤
ATCG
< 18 ≤
ATCG
< 27 ≤
ATCG
< 33 ≤
ATCG
< 40 ≤
ATCG
|