New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1063502218 (1.000)2 (0.010) 2/184 37.1 0.01 coding (2110/3084 nt) RCAP_rcc00968 hypothetical protein
?NC_014034 = 2670696 245 (1.030)coding (583/645 nt) nth endonuclease III
Rejected: Position hash score below cutoff.

CATGATCGCGGCCACCTGATGCGGCTTCAGGCCCTTGGAGCTGAAGAAGCTCCAGACCTGTTTTTGTACATCGGCCGAGCCCTGCAGCCCGCCCATCCCGCCGCCCGC....................................................................................................  >  NC_014034/1063395‑1063502
....................................................................................................CCGCCCGCAAACCCCGCTGCGCCGATTGCCTGATCCGGGATCTGTGCCGTTACGAGGAGAAGACCGCATGAAGAAATACCAGATTGTCGGCATCGGCAACGCCATCGT  <  NC_014034/2670696‑2670597
                                                                                                                                                                                                                
                            AGGCCCTTGGAGCTGAAGAAGCTCCAGACCTGTTTTTGTACATCGGCCGAGCCCTGCAGCCCGCCCATCCCGCCGCCCGCAAACCCCGCTGCGCCGATTGC                                                                                 >  2:3235824/1‑101 (MQ=255)
                                                                             AGCCCTGCAGCCCGCCCATCCCGCCGCCCGCAAACCCCGCTGCGCCGATTGCCTGATCCGGGATCTGTGCCGTTACGAGGAGAAGACCGCATGAAGAAATA                                <  1:3236069/101‑1 (MQ=255)
                                                                                                                                                                                                                
CATGATCGCGGCCACCTGATGCGGCTTCAGGCCCTTGGAGCTGAAGAAGCTCCAGACCTGTTTTTGTACATCGGCCGAGCCCTGCAGCCCGCCCATCCCGCCGCCCGC....................................................................................................  >  NC_014034/1063395‑1063502
....................................................................................................CCGCCCGCAAACCCCGCTGCGCCGATTGCCTGATCCGGGATCTGTGCCGTTACGAGGAGAAGACCGCATGAAGAAATACCAGATTGTCGGCATCGGCAACGCCATCGT  <  NC_014034/2670696‑2670597

Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG