New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 108627241 (1.020)2 (0.010) 2/198 38.6 0.01 coding (236/855 nt) RCAP_rcc00101 ABC transporter permease
?NC_014034 = 3281773 155 (0.650)intergenic (+226/+16) RCAP_rcc03088/RCAP_rcc03089 flavin reductase domain‑containing protein/group 1 glycosyl transferase
Rejected: Position hash score below cutoff.

AGCCCCACCGCCAGCGCCGTCGACAGGATCGCGGCGAAAAGCCCGACCTTCACCGAAACGGCGAGCGCGG.........................................  >  NC_014034/108558‑108627
.......................................................................TTCGGGCGGATCAGGAAAGGCACCGCCTTTCCCCGCCCGT  <  NC_014034/3281773‑3281734
                                                                      |                                        
AGCCCCACCGCCAGCGCCGTCGACAGGATCGCGGCGAAAAGCCCGACCTTCACCGAAACGGCGAGCGCGGTTTCGGGCGGATCAGGAAAGGCACCGCCTTT            >  2:704465/1‑101 (MQ=1)
          CCAGCGCCGTCGACAGGATCGCGGCGAAAAGCCCGACCTTCACCGAAACGGCGAGCGCGGTTTCGGGCGGATCAGGAAAGGCACCGCCTTTCCCCGCCCGT  <  1:704540/101‑1 (MQ=1)
                                                                      |                                        
AGCCCCACCGCCAGCGCCGTCGACAGGATCGCGGCGAAAAGCCCGACCTTCACCGAAACGGCGAGCGCGG.........................................  >  NC_014034/108558‑108627
.......................................................................TTCGGGCGGATCAGGAAAGGCACCGCCTTTCCCCGCCCGT  <  NC_014034/3281773‑3281734

Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 31 ≤  ATCG  < 38 ≤  ATCG