New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1103354 =	80 (0.380)	7 (0.030)	3/178	35.2	0.10	intergenic (‑354/+64)	ugpB/regA2	sn‑glycerol‑3‑phosphate‑binding periplasmic protein ugpB/photosynthetic apparatus regulatory protein RegA
	?	NC_014034	2330307 =	46 (0.190)					intergenic (+282/+30)	RCAP_rcc02161/mrcA	hypothetical protein/penicillin‑binding protein 1A
Rejected: Position hash score below cutoff.

AGGCGGCGGGCGAAGACCTGGGCGGCATGATCGATTTCGAGGACTGATCCCCGGCCCCCGTTTTTTCTTGGCCCAAATACGCCGGGGGTCC.GGGGGCGGAGCCCCCGGCGG...................................................................................................  <  NC_014034/1103464‑1103354 .....................................................................................................GCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGT  >  NC_014034/2330307‑2330405                                                                                                                                                                                                                                                                                             ccaaagatcCCGGGGGTCC.GGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGA                                       <  2:651872/92‑1 (MQ=11)                                                                           AAAGACCCCGGGGGCCC.GGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAG                                     <  1:1357193/101‑1 (MQ=0)                                                                             agatcCCGGGGGTCC.GGGGGCGGTGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGT                                   <  1:4255922/96‑1 (MQ=11)                                                                                acCCGGGGGTCCGGGGGGCGGACCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCG                                 <  2:993567/99‑1 (MQ=2)                                                                                 cCCGGGGGTCC.GGGGGCGGAGCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCC                               <  2:2229482/100‑1 (MQ=11)                                                                                        ggCC.GGGGGCGGGCCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCG                        <  2:1616190/99‑1 (MQ=0)                                                                                              GGGGCGGACCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATC                   <  2:2137317/101‑1 (MQ=1)                                                                                                                                                                                                                     AGGCGGCGGGCGAAGACCTGGGCGGCATGATCGATTTCGAGGACTGATCCCCGGCCCCCGTTTTTTCTTGGCCCAAATACGCCGGGGGTCC.GGGGGCGGAGCCCCCGGCGG...................................................................................................  <  NC_014034/1103464‑1103354 .....................................................................................................GCCCCCGGCGGGTCGCCGAGGCATCGCCTCGGCGAAATCCCTTAGTAAAGACCGCCCGCGGACAGGGATCCGAAGGTCGCCTTCTTCGGGATCACCCGCTGTTCCCCGGT  >  NC_014034/2330307‑2330405 Base quality scores:  ATCG  < 3 ≤  ATCG  < 20 ≤  ATCG  < 27 ≤  ATCG  < 34 ≤  ATCG  < 41 ≤  ATCG