New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1103568	194 (0.890)	2 (0.010)	2/184	37.1	0.01	coding (420/570 nt)	regA2	photosynthetic apparatus regulatory protein RegA
	?	NC_014034	= 3094887	250 (1.050)					coding (2717/3093 nt)	mdtF	multidrug resistance protein MdtF
Rejected: Position hash score below cutoff.

GCCTTGCGGGCGGCGAGTTTGCGCGCCAGCGTCCGGCGATGCATGCCGAGACGGCGCGCGGTTTCCGAGACGTTGAAGCCGGTCTCGGCCAGGGTGCGCTGGATCAGC....................................................................................................  >  NC_014034/1103461‑1103568 ....................................................................................................GGATCAGCACCGCCGTGACCGCGCCAAGGACGCCGAGGGGCACCACCAGCAGCACCGCGACCGGGATCGACCAGCTTTCGTAAAGTGCCGCCAGCACCAGAAACACCA  <  NC_014034/3094887‑3094788                                                                                                                                                                                                                                                                CGAGACGGCGCGCGGTTTCCGAGACGTTGAAGCCGGTCTCGGCCAGGGTGCGCTGGATCAGCACCGCCGTGACCGCGCCAAGGACGCCGAGGGGCACCACC                                                               >  1:2745672/1‑101 (MQ=255)                                                  GACGGCGCGCGGTTTCCGAGACGTTGAAGCCGGTCTCGGCCAGGGTGCGCTGGATCAGCACCGCCGTGACCGCGCCAAGGACGCCGAGGGGCACCACCAGC                                                            <  2:2745474/101‑1 (MQ=255)                                                                                                                                                                                                                  GCCTTGCGGGCGGCGAGTTTGCGCGCCAGCGTCCGGCGATGCATGCCGAGACGGCGCGCGGTTTCCGAGACGTTGAAGCCGGTCTCGGCCAGGGTGCGCTGGATCAGC....................................................................................................  >  NC_014034/1103461‑1103568 ....................................................................................................GGATCAGCACCGCCGTGACCGCGCCAAGGACGCCGAGGGGCACCACCAGCAGCACCGCGACCGGGATCGACCAGCTTTCGTAAAGTGCCGCCAGCACCAGAAACACCA  <  NC_014034/3094887‑3094788 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 32 ≤  ATCG  < 40 ≤  ATCG