New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1147042 =199 (0.880)2 (0.010) 2/190 25.1 0.01 coding (655/1740 nt) RCAP_rcc01075 methyl‑accepting chemotaxis protein
?NC_014035 = 131342 123 (0.900)intergenic (‑20/+88) RCAP_rcp00153/argH2 sugar isomerase domain‑containing protein/argininosuccinate lyase‑2
Rejected: Position hash score below cutoff.

AGGATGACGCGATCCTGAGCGATGCGGATTATGCCGAATTCTGGTCCGACCGCGATGCCGGTCTGCCCTTTGTCGGGGAATTGCAGCTGCGGTCGAAATCCGGGC...................................................................................................  <  NC_014034/1147146‑1147042
....................................................................................................CGGGCACAACTGCGAAGGACATGCCATGTTCAATTTTGACGAAACCCGCTTCTTGCGCATCCAGCAAGGCGCGGTCGATCTGGCCCCGCGCATCGACGCGGCGA  <  NC_014035/131342‑131244
                                                                                                                                                                                                            
                            cTATGCCGAATTCTGGTCCGACCGCGATGCCGGTCTGCCCTTTGTCGGGGAATTGCAGCTGCGGTCGAAATCCGGGCACAACTGCGAAGGACATGCCATGT                                                                             <  2:2166313/100‑1 (MQ=255)
                              ATGCCGAATTCTGGTCCGACCGCGATGCCGGTCTGCCCTTTGTCGGGGAATTGCAGCTGCGGTCGAAATCCGGGCACAACTGCGAAGGACATGCCATGTag                                                                           >  1:2166463/1‑99 (MQ=255)
                                                                                                                                                                                                            
AGGATGACGCGATCCTGAGCGATGCGGATTATGCCGAATTCTGGTCCGACCGCGATGCCGGTCTGCCCTTTGTCGGGGAATTGCAGCTGCGGTCGAAATCCGGGC...................................................................................................  <  NC_014034/1147146‑1147042
....................................................................................................CGGGCACAACTGCGAAGGACATGCCATGTTCAATTTTGACGAAACCCGCTTCTTGCGCATCCAGCAAGGCGCGGTCGATCTGGCCCCGCGCATCGACGCGGCGA  <  NC_014035/131342‑131244

Base quality scores:  ATCG  < 3 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG