New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1181022 =246 (1.160)2 (0.010) 2/178 36.5 0.01 coding (149/873 nt) RCAP_rcc01107 hypothetical protein
?NC_014034 1457467 = 222 (0.930)coding (1014/2193 nt) RCAP_rcc01355 methyl‑accepting chemotaxis sensory transducer
Rejected: Position hash score below cutoff.

GCGCGAGGTTCTGGCCAAAGGGCCGGTCGCGGTGATCCTGGTCGAGGATCTGGTCGAGGTGGAAAGCACGCTGCGCCACCATCTCAAGCTCGGCTTTCGCACGCTGATCCT....................................................................................................  <  NC_014034/1181132‑1181022
....................................................................................................ACGCTGATCCTGATCGGCATCACCCGGGGCATGAACCGTGCTGTCAGCGTCGCCCGCAAGGTCGCCGAAGGGGATCTGAAGGTCGATACCCGCGTCACCTCGAAGGACGAG  >  NC_014034/1457467‑1457566
                                                                                                                                                                                                                   
                                               ATCTGGTCGAGGTGGAAAGCACGCTGCGCCACCATCTCAAGCTCGGCTTTCGCACGCTGATCCTGATCGGCATCACCCGGGGCATGAACCGTGCTGTCAGC                                                                 >  2:2174763/1‑101 (MQ=255)
                                                          GTGGAAAGCACGCTGCGCCACCATCTCAAGCTCGGCTTTCGCACGCTGATCCTGATCGGCATCACCCGGGGCATGAACCGTGCTGTCAGCGTCGCCCGCAA                                                      <  1:2174913/101‑1 (MQ=255)
                                                                                                                                                                                                                   
GCGCGAGGTTCTGGCCAAAGGGCCGGTCGCGGTGATCCTGGTCGAGGATCTGGTCGAGGTGGAAAGCACGCTGCGCCACCATCTCAAGCTCGGCTTTCGCACGCTGATCCT....................................................................................................  <  NC_014034/1181132‑1181022
....................................................................................................ACGCTGATCCTGATCGGCATCACCCGGGGCATGAACCGTGCTGTCAGCGTCGCCCGCAAGGTCGCCGAAGGGGATCTGAAGGTCGATACCCGCGTCACCTCGAAGGACGAG  >  NC_014034/1457467‑1457566

Base quality scores:  ATCG  < 3 ≤  ATCG  < 23 ≤  ATCG  < 31 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG