New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1224228	149 (0.880)	16 (0.090)	9/142	24.9	0.09	intergenic (‑100/+69)	hisF/hisA	imidazole glycerol phosphate synthase subunit HisF/1‑(5‑phosphoribosyl)‑5‑[(5‑ phosphoribosylamino)methylideneamino] imidazole‑4‑carboxamide isomerase
	?	NC_014034	2249335 =	164 (0.690)					intergenic (‑131/‑174)	parE/RCAP_rcc02080	DNA topoisomerase IV subunit B/HAD superfamily hydrolase
Rejected: Position hash score below cutoff.

GCGGGGCTCTGCCCCGCACCCCGGGATATTTGTGGCAAGATGAAA..................................................................  >  NC_014034/1224184‑1224228 ..........................................................................TTTCATCTTGCCGAAAATATCCCGGGGGGTGAATGGC  >  NC_014034/2249335‑2249371                                              |||||||||||||||||||||||||||||                                      cCGGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGG            >  1:1794191/2‑101 (MQ=255)  CGGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGG           <  1:264505/101‑1 (MQ=255)  CGGGGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGG           >  1:2722538/1‑101 (MQ=255)     GGCTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTG        <  1:99455/101‑1 (MQ=255)       CTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAA      <  1:3670744/101‑1 (MQ=255)       CTCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAA      >  2:449692/1‑101 (MQ=255)        TCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAAT     <  1:347602/101‑1 (MQ=255)        TCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAAT     <  2:2085309/101‑1 (MQ=255)        TCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAAT     <  2:33448/101‑1 (MQ=255)        TCTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAAT     <  2:4403546/101‑1 (MQ=255)         CTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATG    <  1:1635683/101‑1 (MQ=255)         CTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATG    <  1:3290351/101‑1 (MQ=255)         CTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATG    <  1:3883138/101‑1 (MQ=255)         CTGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATG    <  2:4171855/101‑1 (MQ=255)          TGCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATGc   >  2:1354266/1‑100 (MQ=255)           GCCCCGGACCCCGGGATATTTGTGGCAAGATGAAAGGGCGCCCCCAGCGGAGCGCCCTTTTCCATTTCACCTTGGCGAAAATATCCCGGGGGGTGAATGcg  >  1:2625026/1‑99 (MQ=255)                                              |||||||||||||||||||||||||||||                                      GCGGGGCTCTGCCCCGCACCCCGGGATATTTGTGGCAAGATGAAA..................................................................  >  NC_014034/1224184‑1224228 ..........................................................................TTTCATCTTGCCGAAAATATCCCGGGGGGTGAATGGC  >  NC_014034/2249335‑2249371 Base quality scores:  ATCG  < 3 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG