New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 = 1246376182 (0.860)2 (0.010) 2/178 36.5 0.01 coding (1037/1203 nt) RCAP_rcc01175 major facilitator superfamily protein
?NC_014034 = 3702433 222 (0.930)coding (1679/2640 nt) mutS DNA mismatch repair protein MutS
Rejected: Position hash score below cutoff.

CGAGACCCCCGCCGTCTGGGCGCTGACGCTGTCAGGCGCGATCGGCGGCGCCATCGTGCTGACGCAACCCATGGCCTATCTGCAGGATCTGATGGCCGAGCGCCCGGGCGC....................................................................................................  >  NC_014034/1246266‑1246376
....................................................................................................CGCCCGGGCGCTGGCCGAGATCGACCTGACCGCCGCCTTCGCCGATCTGGCCGCCGCCGAGGATTGGGTCGAACCCATGGTCGATCAAAGCCACGCCTTCGAGATCGAGGG  <  NC_014034/3702433‑3702334
                                                                                                                                                                                                                   
                                                                      ATGGCCTATCTGCAGGATCTGATGGCCGAGCGCCCGGGCGCTGGCCGAGATCGACCTGACCGCCGCCTTCGCCGATCTGGCCGCCGCCGAGGATTGGGTCG                                          >  2:3883628/1‑101 (MQ=255)
                                                                            TATCTGCAGGATCTGATGGCCGAGCGCCCGGGCGCTGGCCGAGATCGACCTGACCGCCGCCTTCGCCGATCTGGCCGCCGCCGAGGATTGGGTCGAACCCA                                    <  1:3883913/101‑1 (MQ=255)
                                                                                                                                                                                                                   
CGAGACCCCCGCCGTCTGGGCGCTGACGCTGTCAGGCGCGATCGGCGGCGCCATCGTGCTGACGCAACCCATGGCCTATCTGCAGGATCTGATGGCCGAGCGCCCGGGCGC....................................................................................................  >  NC_014034/1246266‑1246376
....................................................................................................CGCCCGGGCGCTGGCCGAGATCGACCTGACCGCCGCCTTCGCCGATCTGGCCGCCGCCGAGGATTGGGTCGAACCCATGGTCGATCAAAGCCACGCCTTCGAGATCGAGGG  <  NC_014034/3702433‑3702334

Base quality scores:  ATCG  < 3 ≤  ATCG  < 12 ≤  ATCG  < 20 ≤  ATCG  < 30 ≤  ATCG  < 39 ≤  ATCG