New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1255865	62 (0.270)	21 (0.090)	2/192	38.0	0.25	intergenic (+35/+207)	RCAP_rcc01184/RCAP_rcc01185	CsbD family protein/methyl‑accepting chemotaxis sensory transducer
	?	NC_014034	1255866 =	62 (0.260)					intergenic (+36/+206)	RCAP_rcc01184/RCAP_rcc01185	CsbD family protein/methyl‑accepting chemotaxis sensory transducer
Rejected: Position hash score below cutoff.

GAAATACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGG...............  >  NC_014034/1255767‑1255865 .......................................................................................................CTGTCTCGGTC  >  NC_014034/1255866‑1255876                                                                                                    ||||            GAAATACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGC               >  2:2938298/1‑101 (MQ=1)  AAATACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCC              >  1:2111390/1‑101 (MQ=1)  AAATACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCC              <  2:353745/101‑1 (MQ=1)  AAATACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCC              >  2:3167502/1‑101 (MQ=1)  AAATACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCC              >  1:524709/1‑101 (MQ=1)  AAATACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCC              <  1:516183/101‑1 (MQ=1)   AATACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCC             <  1:1456305/101‑1 (MQ=1)   AATACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCC             <  2:4664679/101‑1 (MQ=1)    ATACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCC            <  2:252505/101‑1 (MQ=1)    ATACGGCCGCACAAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCC            >  1:2529940/1‑101 (MQ=1)     aACGGCCGCACCAAAGAGGCCGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCc           <  2:1012307/100‑2 (MQ=0)      ACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcg          <  2:532773/101‑3 (MQ=1)      ACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcg          >  1:2204400/1‑99 (MQ=1)      ACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcg          <  1:2210507/101‑3 (MQ=1)      ACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcg          >  1:2410258/1‑99 (MQ=1)      ACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcg          <  2:2846657/101‑3 (MQ=1)      ACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcg          <  2:2622116/101‑3 (MQ=1)        GGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcgct        <  2:3132219/101‑5 (MQ=1)        GGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcgct        <  1:3736971/101‑5 (MQ=1)        GGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcgct        >  1:4605002/1‑97 (MQ=1)         GCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcgctt       <  1:2529107/101‑6 (MQ=1)         GCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcgctt       >  2:1680391/1‑96 (MQ=1)         GCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcgctt       <  1:1651661/101‑6 (MQ=1)         GCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcgctt       <  2:470742/101‑6 (MQ=1)          CCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcgcttt      <  2:434255/101‑7 (MQ=1)           CGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcgctttc     <  2:4448766/101‑8 (MQ=1)             CACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcgctttcgg   >  2:3778869/1‑92 (MQ=1)              ACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcgctttcggc  >  1:2673928/1‑91 (MQ=1)              ACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGGGCCCCcgctttcggc  >  1:4603664/1‑91 (MQ=1)                                                                                                    ||||            GAAATACGGCCGCACCAAGGAGGCGGCGAAGAAGGAAGTCGACGACTTCCTGTCGAAACTCTGACCTAGGGGTGCCGGACCGGAACCGGGGGCCTTCGG...............  >  NC_014034/1255767‑1255865 .......................................................................................................CTGTCTCGGTC  >  NC_014034/1255866‑1255876 Base quality scores:  ATCG  < 3 ≤  ATCG  < 21 ≤  ATCG  < 29 ≤  ATCG  < 34 ≤  ATCG  < 39 ≤  ATCG