New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	= 1303918	90 (0.390)	43 (0.190)	2/190	37.8	0.32	intergenic (+105/+52)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
	?	NC_014034	1303919 =	90 (0.380)					intergenic (+106/+51)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
Rejected: Position hash score below cutoff.

GCGCTGCCTCCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCC.........................  >  NC_014034/1303822‑1303918 .....................................................................................................GCCAAGATGGGGGGCCCCCCT  >  NC_014034/1303919‑1303939                                                                                                  ||||                      gctgccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAG                       >  2:681737/11‑101 (MQ=0)  ctgccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGG                      <  1:2187217/92‑1 (MQ=0)  ctgccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGG                      >  2:1369764/10‑101 (MQ=0)   tgccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGC                     >  1:1548280/9‑101 (MQ=0)   tgccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGC                     >  1:2827803/9‑101 (MQ=0)   tgccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGC                     <  1:4610508/93‑1 (MQ=0)    gccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCC                    <  2:588925/94‑1 (MQ=0)     ccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCA                   <  1:1907128/95‑1 (MQ=0)     ccccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCA                   <  1:2575966/95‑1 (MQ=0)      cccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAA                  <  1:4321561/96‑1 (MQ=1)      cccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGCGAATTGGCCGAAGGCCAA                  >  2:3216007/6‑101 (MQ=0)       ccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAG                 >  2:1513815/5‑101 (MQ=1)       ccctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAG                 <  2:1426124/97‑1 (MQ=1)        cctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGA                >  2:2308583/4‑101 (MQ=1)         ctCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAg               >  1:2130087/3‑100 (MQ=11)          tCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAgg              >  1:3300338/2‑99 (MQ=14)            GGCTTCGCCTCCGCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGG            <  2:519724/101‑1 (MQ=12)            GGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGG            >  2:3847171/1‑101 (MQ=32)            GGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGG            >  1:3258070/1‑101 (MQ=32)            GGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGG            >  1:3034299/1‑101 (MQ=32)            GGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTCGCCGAAGGCCAAGAGGGG            >  2:1544112/1‑101 (MQ=17)             GCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGG           >  1:4158270/1‑101 (MQ=32)              CTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGG          <  2:2115408/101‑1 (MQ=32)               TTCGCCTCCCCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGc         <  1:127641/101‑2 (MQ=18)               TTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGc         >  1:1373142/1‑100 (MQ=33)                TCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGca        <  2:3005747/101‑3 (MQ=34)                 CGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcag       >  2:2659336/1‑98 (MQ=35)                 CGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcag       >  2:902699/1‑98 (MQ=35)                 CGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcag       >  1:1659252/1‑98 (MQ=35)                 CGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcag       <  1:2889601/101‑4 (MQ=35)                 CGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcag       >  1:3056446/1‑98 (MQ=35)                 CGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcag       >  1:363569/1‑98 (MQ=35)                  GCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagc      >  2:484711/1‑97 (MQ=35)                  GCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagc      <  1:3459872/101‑5 (MQ=35)                   CCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcg     <  2:1877863/101‑6 (MQ=35)                   CCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcg     >  2:2002466/1‑96 (MQ=35)                   CCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcg     >  2:240521/1‑96 (MQ=35)                   CCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGCGAATTGGCCGAAGGCCAAGAGGGGGGcagcg     >  2:3939473/1‑96 (MQ=25)                    CTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcgc    >  2:4149903/1‑95 (MQ=35)                    CTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcgc    >  1:3417906/1‑95 (MQ=35)                    CTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcgc    >  1:4293630/1‑95 (MQ=35)                     TCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcggc   >  1:1084325/1‑94 (MQ=25)                     TCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcgcc   >  1:4092162/1‑94 (MQ=35)                      CACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcgccc  <  2:4392741/101‑9 (MQ=35)                      CACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcgccc  >  2:2966740/1‑93 (MQ=35)                      CACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCCGAAGGCCAAGAGGGGGGcagcgccc  <  1:4408096/101‑9 (MQ=35)                                                                                                  ||||                      GCGCTGCCTCCGGCTTCGCCTCACCCCCGGGATATTTGGGGCAAGATAAACCCCATCCTTTCACCTTGCCGCAAATATCCCGGGGGGTGAATTGGCC.........................  >  NC_014034/1303822‑1303918 .....................................................................................................GCCAAGATGGGGGGCCCCCCT  >  NC_014034/1303919‑1303939 Base quality scores:  ATCG  < 3 ≤  ATCG  < 18 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG