New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1303934 =	93 (0.410)	50 (0.220)	14/190	27.0	0.26	intergenic (+121/+36)	urtE/RCAP_rcc01231	urea ABC transporter ATP‑binding protein UrtE/UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
	?	NC_014034	2578420 =	192 (0.810)					intergenic (+29/+141)	purU/pgi	formyltetrahydrofolate deformylase/glucose‑6‑phosphate isomerase
Rejected: Position hash score below cutoff.

CTCGGCGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGG.....................................................................................................  <  NC_014034/1304038‑1303934 ....................................................................................................GGGGGCGCTGCCCCCCTCTT.GCCTTCGGCAATTCACCCCCCGGGATATTTGCGGCAAGATGAATGAGAAGCCCCGATCGTGCTTTATCTTGCCGAAAATATCCCG  >  NC_014034/2578420‑2578519                                                                                                                                                                                                                      GCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCG                                                                                                     <  1:4547370/101‑1 (MQ=1)       GCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCG                                                                                                     >  2:1373047/1‑101 (MQ=1)       GCGCTTTAGGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCG                                                                                                     <  2:2203147/101‑1 (MQ=1)        CGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGC                                                                                                    <  1:3686316/101‑1 (MQ=1)         GCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCT                                                                                                   <  2:2551189/101‑1 (MQ=1)         GCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCT                                                                                                   <  1:3588944/101‑1 (MQ=1)          CTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTG                                                                                                  <  2:3808747/101‑1 (MQ=1)           TTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGC                                                                                                 >  2:3002466/1‑101 (MQ=1)            ttagggtTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCC                                                                                                <  1:526511/94‑1 (MQ=0)            TTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCC                                                                                                >  2:363532/1‑101 (MQ=1)             TATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCC                                                                                               >  1:2966969/1‑101 (MQ=1)              ATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCC                                                                                              >  1:3164831/1‑101 (MQ=1)               gGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCC                                                                                             <  2:1469912/100‑1 (MQ=1)                 CGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCc                                                                                           >  2:3380879/1‑100 (MQ=1)                 CGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT                                                                                           <  2:1274699/101‑1 (MQ=1)                 CGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT                                                                                           <  2:3821155/101‑1 (MQ=1)                 CGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT                                                                                           <  2:1631782/101‑1 (MQ=1)                 CGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT                                                                                           <  2:1996788/101‑1 (MQ=1)                 CGTTCAAGCCGGTGCACAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCT                                                                                           >  2:2827587/1‑101 (MQ=1)                    TCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT                                                                                        <  1:1163243/101‑1 (MQ=1)                     CAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.G                                                                                      >  2:363466/1‑101 (MQ=1)                      AAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Gg                                                                                     <  1:2610414/101‑2 (MQ=1)                      AAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Gg                                                                                     <  2:463070/101‑2 (MQ=1)                      AAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTCGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Gg                                                                                     >  1:567573/1‑100 (MQ=1)                       AGCCGGTGCGCAAGCCCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggc                                                                                    <  1:2118444/101‑3 (MQ=1)                       AGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggc                                                                                    <  2:2156935/101‑3 (MQ=1)                        GCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcc                                                                                   <  1:3140509/101‑4 (MQ=1)                        GCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcc                                                                                   <  1:1321029/101‑4 (MQ=1)                         CCGGTGCGCAAGCCCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcct                                                                                  <  2:1005840/101‑5 (MQ=1)                         CCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcct                                                                                  <  1:2772047/101‑5 (MQ=1)                         CCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcct                                                                                  >  1:2002606/1‑97 (MQ=1)                          CGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcctt                                                                                 >  2:3012725/1‑96 (MQ=11)                          CGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcctt                                                                                 >  2:3829949/1‑96 (MQ=11)                          CGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTT.Ggcctt                                                                                 <  2:801729/101‑6 (MQ=11)                           GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTC                                                                                 <  1:4449681/101‑1 (MQ=31)                           GGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTC                                                                                 <  1:1628336/101‑1 (MQ=31)                            GTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCG                                                                                <  2:4441012/101‑1 (MQ=32)                              GCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGC                                                                              >  1:2355249/1‑101 (MQ=34)                               CGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGGTGCCCCCCTCTTGGCCTTCGGCc                                                                             >  2:566670/1‑100 (MQ=25)                               CGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCc                                                                             <  1:825977/101‑2 (MQ=35)                                 CAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaa                                                                           <  2:1461083/101‑4 (MQ=35)                                 CAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaa                                                                           <  2:309369/101‑4 (MQ=35)                                  AAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaat                                                                          <  2:286506/101‑5 (MQ=21)                                  AAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaat                                                                          <  2:1809356/101‑5 (MQ=21)                                  AAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaat                                                                          >  2:3056202/1‑97 (MQ=21)                                  AAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaat                                                                          <  1:4164975/101‑5 (MQ=21)                                   AGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaatt                                                                         >  2:3063722/1‑96 (MQ=18)                                   AGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaatt                                                                         <  1:4243843/101‑6 (MQ=18)                                   AGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaatt                                                                         >  1:4053640/1‑96 (MQ=18)                                   AGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGGCGCTGCCCCCCTCTTGGCCTTCGGCcaatt                                                                         >  1:1544218/1‑96 (MQ=18)                                                                                                                                                                                                                CTCGGCGCGCTTTATGCGTTCAAGCCGGTGCGCAAGACCCTGATGCGGGCGGGCTTGGGGATGCGCTGACAGGGTGCGGCCCTGCGGCCCGCCCCGAAAAGGGGG.....................................................................................................  <  NC_014034/1304038‑1303934 ....................................................................................................GGGGGCGCTGCCCCCCTCTT.GCCTTCGGCAATTCACCCCCCGGGATATTTGCGGCAAGATGAATGAGAAGCCCCGATCGTGCTTTATCTTGCCGAAAATATCCCG  >  NC_014034/2578420‑2578519 Base quality scores:  ATCG  < 3 ≤  ATCG  < 19 ≤  ATCG  < 27 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG