New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 13074 =204 (0.940)2 (0.010) 2/182 36.9 0.01 coding (999/1098 nt) flgI flagellar P‑ring protein FlgI
?NC_014034 = 2952082 229 (0.960)coding (212/951 nt) RCAP_rcc02763 hypothetical protein
Rejected: Position hash score below cutoff.

CTGCAGCGATCAGTTGACCACGAATTCCGCGTGCAGGGCCCCGGCGGCATTGATGCTTTTCAGGATGTCGATCATGTCGCGCGGGCTGACCCCCAGCGCATTCAGCCCG....................................................................................................  <  NC_014034/13182‑13074
....................................................................................................TTCAGCCCGACCGAAAGCTCGCGCCGCCACAAAAGCCAGGCCAGAATGACCGGAATGGCGAAAAGCGAGCGGAAGAAGACAGTCTCGCCCGGCGGGACATGCGGGGCCA  <  NC_014034/2952082‑2951983
                                                                                                                                                                                                                 
                                            CGGCATTGATGCTTTTCAGGATGTCGATCATGTCGCGCGGGCTGACCCCCAGCGCATTCAGCCCGACCGAAAGCTCGCGCCGCCACAAAAGCCAGGCCAGA                                                                  >  2:524810/1‑101 (MQ=255)
                                               CATTGATGCTTTTCAGGATGTCGATCATGTCGCGCGGGCTGACCCCCAGCGCATTCAGCCCGACCGAAAGCTCGCGCCGCCACAAAAGCCAGGCCAGAATG                                                               <  1:524858/101‑1 (MQ=255)
                                                                                                                                                                                                                 
CTGCAGCGATCAGTTGACCACGAATTCCGCGTGCAGGGCCCCGGCGGCATTGATGCTTTTCAGGATGTCGATCATGTCGCGCGGGCTGACCCCCAGCGCATTCAGCCCG....................................................................................................  <  NC_014034/13182‑13074
....................................................................................................TTCAGCCCGACCGAAAGCTCGCGCCGCCACAAAAGCCAGGCCAGAATGACCGGAATGGCGAAAAGCGAGCGGAAGAAGACAGTCTCGCCCGGCGGGACATGCGGGGCCA  <  NC_014034/2952082‑2951983

Base quality scores:  ATCG  < 3 ≤  ATCG  < 8 ≤  ATCG  < 20 ≤  ATCG  < 31 ≤  ATCG  < 40 ≤  ATCG