New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1373324 =	216 (0.980)	2 (0.010)	2/186	37.3	0.01	coding (96/3150 nt)	RCAP_rcc01290	UvrD/REP helicase
	?	NC_014034	3374274 =	222 (0.930)					coding (1218/1236 nt)	RCAP_rcc03176	PAS/PAC sensor domain‑containing protein
Rejected: Position hash score below cutoff.

GCGCCTCGGCGACCTGATCTTGCGCGATCAGTTGGGCGCGGATGCGCGCCTTGAGTTCCGCCGCCGCCGCCTCGGTGAAGGTCACCGCCAGAATGCGCCCCGGCGCG....................................................................................................  <  NC_014034/1373430‑1373324 ....................................................................................................CGGCGCGCATGAACTGGTTCATCGAGGACCCGATCTCCTCCGACAGGCGCATGATCGATTCGAGCCGGTTCTTGATGTCGGCGTGGAAAATGTCGAGCTGATCGATC  >  NC_014034/3374274‑3374373                                                                                                                                                                                                                                                           atctCGCCTTGAGTTCCGCCGCCGCCGCCTCGGTGAAGGTCACCGCCAGAATGCGCCCCGGCGCGCATGAACTGGTTCATCGAGGACCCGATCTCCTCCGA                                                                  <  2:1961342/97‑1 (MQ=255)                                               CGCCTTGAGTTCCGCCGCCGCCGCCTCGGTGAAGGTCACCGCCAGAATGCGCCCCGGCGCGCATGAACTGGTTCATCGAGGACCCGATCTCCTCCGAagat                                                              >  1:1961477/1‑97 (MQ=255)                                                                                                                                                                                                                 GCGCCTCGGCGACCTGATCTTGCGCGATCAGTTGGGCGCGGATGCGCGCCTTGAGTTCCGCCGCCGCCGCCTCGGTGAAGGTCACCGCCAGAATGCGCCCCGGCGCG....................................................................................................  <  NC_014034/1373430‑1373324 ....................................................................................................CGGCGCGCATGAACTGGTTCATCGAGGACCCGATCTCCTCCGACAGGCGCATGATCGATTCGAGCCGGTTCTTGATGTCGGCGTGGAAAATGTCGAGCTGATCGATC  >  NC_014034/3374274‑3374373 Base quality scores:  ATCG  < 3 ≤  ATCG  < 33 ≤  ATCG  < 34 ≤  ATCG  < 35 ≤  ATCG  < 41 ≤  ATCG