New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_014034 1387099 =222 (1.010)2 (0.010) 2/186 37.3 0.01 coding (337/627 nt) RCAP_rcc01299 hypothetical protein
?NC_014034 = 2250682 225 (0.950)coding (172/441 nt) RCAP_rcc02081 MaoC family protein
Rejected: Position hash score below cutoff.

GGCAGCGCGCGGCGGGTAGTCACGGTGCCGCCCCTGTCGGTGTAGCCGAAGGCGACCGGCGCGCAGGCGCGGATCGCCCCATGCAGCACCGCCAGATCCTCGGCCCT....................................................................................................  <  NC_014034/1387205‑1387099
....................................................................................................CGGCCCTTGAACAGCGTGGTGCTGGCGAAATCCTCGTCCAGATGCACCGGGTTGCGGTCGGTCGAGACCTCGGCGAACAACTCGATGTCGCGGTCGGTGATTTCCTT  <  NC_014034/2250682‑2250583
                                                                                                                                                                                                               
                                  TGTCGGTGTAGCCGAAGGCGACCGGCGCGCAGGCGCGGATCGCCCCATGCAGCACCGCCAGATCCTCGGCCCTTGAACAGCGTGGTGCTGGCGAAATCCTC                                                                          >  2:1786330/1‑101 (MQ=255)
                                                                   CGCGGATCGCCCCATGCAGCACCGCCAGATCCTCGGCCCTTGAACAGCGTGGTGCTGGCGAAATCCTCGTCCAGATGCACCGGGTTGCGGTCGGTCGAGAC                                         <  1:1786449/101‑1 (MQ=255)
                                                                                                                                                                                                               
GGCAGCGCGCGGCGGGTAGTCACGGTGCCGCCCCTGTCGGTGTAGCCGAAGGCGACCGGCGCGCAGGCGCGGATCGCCCCATGCAGCACCGCCAGATCCTCGGCCCT....................................................................................................  <  NC_014034/1387205‑1387099
....................................................................................................CGGCCCTTGAACAGCGTGGTGCTGGCGAAATCCTCGTCCAGATGCACCGGGTTGCGGTCGGTCGAGACCTCGGCGAACAACTCGATGTCGCGGTCGGTGATTTCCTT  <  NC_014034/2250682‑2250583

Base quality scores:  ATCG  < 3 ≤  ATCG  < 24 ≤  ATCG  < 31 ≤  ATCG  < 33 ≤  ATCG  < 40 ≤  ATCG