New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1387443 =	175 (0.810)	2 (0.010)	2/182	36.9	0.01	intergenic (+54/‑5)	RCAP_rcc01299/RCAP_rcc01300	hypothetical protein/Cas3 family CRISPR‑associated helicase
	?	NC_014034	1742933 =	204 (0.860)					coding (1159/1182 nt)	RCAP_rcc01612	hypothetical protein
Rejected: Position hash score below cutoff.

CGCCGCGGTCTTGCGCCAAAAGCGCCACCATCCGCAGATGATCAAGCAGTGTCTGCCAGTCGGACCGGTCCGCCTGCGTTCCCGAATGTGCATAATGTGTCATCGCCC...................................................................................................  <  NC_014034/1387550‑1387443 ...................................................................................................TCATCGCCCGGGTGATGCCGTCAAGCGTCAGCGGGAACATGCGGCCCTCGAAGGCCTGCTGGATCATCGCGATCGACTGCGTGTAGCCCCAGTGCCGTTCCGGCACCG  >  NC_014034/1742933‑1743031                                                                                                                                                                                                                                                                                        GCCTGCGTTCCCGAATGTGCATAATGTGTCATCGCCCGGGTGATGCCGTCAAGCGTCAGCGGGAACATGCGGCCCTCGAAGGCCTGCTGGATCATCGCGAT                                     >  2:304912/1‑101 (MQ=255)                                                                            GCGTTCCCGAATGTGCATAATGTGTCATCGCCCGGGTGATGCCGTCAAGCGTCAGCGGGAACATGCGGCCCTCGAAGGCCTGCTGGATCATCGCGATCGAC                                 <  1:304944/101‑1 (MQ=255)                                                                                                                                                                                                                 CGCCGCGGTCTTGCGCCAAAAGCGCCACCATCCGCAGATGATCAAGCAGTGTCTGCCAGTCGGACCGGTCCGCCTGCGTTCCCGAATGTGCATAATGTGTCATCGCCC...................................................................................................  <  NC_014034/1387550‑1387443 ...................................................................................................TCATCGCCCGGGTGATGCCGTCAAGCGTCAGCGGGAACATGCGGCCCTCGAAGGCCTGCTGGATCATCGCGATCGACTGCGTGTAGCCCCAGTGCCGTTCCGGCACCG  >  NC_014034/1742933‑1743031 Base quality scores:  ATCG  < 3 ≤  ATCG  < 33 ≤  ATCG  < 35 ≤  ATCG  < 36 ≤  ATCG  < 41 ≤  ATCG