New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_014034	1395432 =	149 (0.950)	41 (0.260)	10/132	22.7	0.21	intergenic (+244/‑687)	RCAP_rcc01306/RCAP_rcc01307	Cas2 family CRISPR‑associated protein/hypothetical protein
	?	NC_014034	= 1397598	153 (0.640)					coding (1480/1578 nt)	RCAP_rcc01307	hypothetical protein
Rejected: Position hash score below cutoff.

CCAAAGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG......................................................................................................................................  <  NC_014034/1395478‑1395432 .................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCAGCGCGGCGCTGAGGCGGGCCATGATCGGGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC  <  NC_014034/1397598‑1397499                                                ||||||||||||||||||||||||||||||||||                                                                                                     cggtcaagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGC                                                                                  >  2:861627/11‑101 (MQ=0)  ggtcaagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCG                                                                                 >  2:546127/10‑101 (MQ=1)   gtcaagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGG                                                                                >  1:3786518/9‑101 (MQ=1)    tcaagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGG                                                                               <  1:1304410/94‑1 (MQ=1)    tcaagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGG                                                                               >  1:2427068/8‑101 (MQ=1)     caagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              <  2:756037/95‑1 (MQ=1)     caagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              >  2:3797682/7‑101 (MQ=1)     caagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              >  1:191034/7‑101 (MQ=1)     caagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              >  1:3774409/7‑101 (MQ=1)     caagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGG                                                                              >  1:279126/7‑101 (MQ=1)      aagctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGG                                                                             >  1:1546070/6‑101 (MQ=1)       agctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGG                                                                            <  1:333876/97‑1 (MQ=1)        gctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGg                                                                           >  2:3317078/4‑100 (MQ=1)        gctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGg                                                                           >  1:935356/4‑100 (MQ=1)        gctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                                                                           <  1:579838/98‑1 (MQ=1)        gctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                                                                           <  2:2371261/98‑1 (MQ=1)        gctGATGTTTCGAACCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGA                                                                           <  1:2549952/98‑1 (MQ=1)         ctGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAG                                                                          >  2:4370857/3‑101 (MQ=1)          tGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                         <  1:132456/100‑1 (MQ=1)          tGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGC                                                                         <  2:4345657/100‑1 (MQ=1)           GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCG                                                                        >  1:1670170/1‑101 (MQ=1)           GATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCG                                                                        <  2:3688872/101‑1 (MQ=1)            ATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCGc                                                                       >  1:4301652/1‑100 (MQ=1)              GTTTCTATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                                     <  2:2526521/101‑1 (MQ=1)              GTTTCGATCCACGCGCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGAGGGGGGAGCGACG                                                                     <  2:3096506/101‑1 (MQ=0)              GTTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACG                                                                     >  1:2199647/1‑101 (MQ=1)               TTTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGa                                                                    >  1:2177997/1‑100 (MQ=1)                TTCGATCCACGCCCCCGCGGGGGGAGGGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGat                                                                   <  2:2184941/101‑3 (MQ=1)                TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGat                                                                   >  1:1960256/1‑99 (MQ=1)                TTCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGat                                                                   <  1:3661711/101‑3 (MQ=1)                 TCGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGGGCGACGatc                                                                  >  1:2067976/1‑98 (MQ=0)                  CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 >  2:2994246/1‑97 (MQ=1)                  CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 >  2:3109446/1‑97 (MQ=1)                  CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 <  1:131694/101‑5 (MQ=1)                  CGATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 <  2:3896783/101‑5 (MQ=1)                  CGATCCACGCCCCCGCGGCGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcg                                                                 <  2:1603069/101‑5 (MQ=0)                   GATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcga                                                                >  2:1062295/1‑96 (MQ=1)                   GATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGaccga                                                                >  2:2205582/1‑96 (MQ=1)                    ATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcgag                                                               >  2:1565005/1‑95 (MQ=0)                    ATCCACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcgag                                                               >  1:3718265/1‑95 (MQ=0)                       CACGCCCCCGCGGGGGGAGCGACCGGCGGGATCCACGACCGGGCCGCCAGCCCTCATAGGTTTCGATCCACGCCCCCGCGGGGGGAGCGACGatcgagccc                                                            <  2:3485885/101‑10 (MQ=0)                                                                                 GGTTTCGATCCACGCCCCCGGGGGGGGAGCGACGTCAGCGCGGCGCTGAGGCGGGCCATGATCGGGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC  <  1:1224676/101‑1 (MQ=1)                                                ||||||||||||||||||||||||||||||||||                                                                                                     CCAAAGCGGCGATGTTTCGATCCACGCCCCCGCGGGGGGAGCGACCG......................................................................................................................................  <  NC_014034/1395478‑1395432 .................................................................................GTTTCGATCCACGCCCCCGCGGGGGGAGCGACGTCAGCGCGGCGCTGAGGCGGGCCATGATCGGGTTGTTTCGATCCACGCCCCCGCGGGGGGAGCGACC  <  NC_014034/1397598‑1397499 Base quality scores:  ATCG  < 3 ≤  ATCG  < 16 ≤  ATCG  < 24 ≤  ATCG  < 33 ≤  ATCG  < 39 ≤  ATCG